Array 1 1592-3055 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYML01000402.1 Salmonella enterica strain BCW_4961 NODE_402_length_3096_cov_7.02711, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 1592 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 1653 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 1715 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 1776 29 100.0 32 ............................. TAGCCGCGGCTCACCGTCTTTCGGTTCAGGCC 1837 29 100.0 32 ............................. CGGGCCGTCTTTCAGCGTCTTCCACTCGCCGC 1898 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 1959 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 2020 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 2081 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 2142 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 2203 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 2264 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 2325 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 2386 29 100.0 63 ............................. TTGGCGTGCGGCGAGGTCATCAGATAAACCGTCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 2478 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 2539 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2600 29 96.6 32 .............C............... TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 2661 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 2722 29 96.6 32 .............C............... CAACTGGTGATACGGTTATGTCTCGTATCGCA 2783 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 2844 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 2905 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2966 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 3027 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= =============================================================== ================== 24 29 98.6 33 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1103-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYML01000567.1 Salmonella enterica strain BCW_4961 NODE_567_length_1521_cov_6.22966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1102 29 100.0 32 ............................. CCAGAACGATGACGTTGAAGTACCGAAAAATA 1041 29 100.0 32 ............................. TTAATTTTCCCCTGTGGTCGAAACCGTCACAC 980 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 919 29 100.0 32 ............................. TCATCAACTGAGCAGAGTATCGGCAACTTGTA 858 29 100.0 32 ............................. TACCTGGTAAGCCGCGGCATTAACGTTCTGCC 797 29 100.0 32 ............................. CGAAAATGCTTTGTATTGTCCATTGGCACACC 736 29 100.0 32 ............................. GCAGGAGAATCGCATCATCGACAACATGGTGA 675 29 100.0 32 ............................. CCGTGCATTTTTAGCAGATGAGTACCCAACAT 614 29 100.0 32 ............................. ACGATTATTTGACGCCAGAAGCAGCAGATGCA 553 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 492 29 100.0 32 ............................. CGATTCAGATTCGCCATTGTTAATTTTCCCCT 431 29 96.6 32 .....T....................... CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT 370 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 309 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 498-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYML01000670.1 Salmonella enterica strain BCW_4961 NODE_670_length_916_cov_6.15976, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 497 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 436 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 375 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 314 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 253 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 192 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59-799 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYML01000692.1 Salmonella enterica strain BCW_4961 NODE_692_length_840_cov_5.6593, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 59 29 100.0 32 ............................. TCACTTTTTGCACACTCAGTGACGACATTGTA 120 29 100.0 32 ............................. GCAAAAGTCATGGCGTCATTCGGTGCTGATAT 181 29 100.0 32 ............................. GACAAAGGAGATATCCGGTTAGCGCTTTCACA 242 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGACA 303 29 100.0 32 ............................. GCATCGCCTGGCTGAGTCCGTCGCTAACTGCG 364 28 96.6 32 ..........-.................. ACATCTGGGAGGCGTGGCTAAAACTTACAGCT 424 29 100.0 32 ............................. GGCGCGCGTGTTGTTGGTGATTCCGCATATCT 485 29 100.0 32 ............................. CGGGCGCATTGTACGCGATGCAGACCATGCCG 546 29 100.0 32 ............................. CAGACCGATCCGCGATCATTTTCTGTGGCTGT 607 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 710 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 771 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 12 29 99.7 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //