Array 1 334927-336052 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCX01000002.1 Salmonella enterica strain BCW_2479 NODE_2_length_460194_cov_3.06856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334927 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 334988 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 335049 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 335110 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 335171 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 335232 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 335293 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 335354 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335415 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335476 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 335537 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335598 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335659 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335720 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 335781 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 335842 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 335903 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 335964 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 336025 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352310-353973 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCX01000002.1 Salmonella enterica strain BCW_2479 NODE_2_length_460194_cov_3.06856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 352310 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 352371 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 352432 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 352493 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 352560 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 352621 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 352682 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 352743 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 352804 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 352865 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 352926 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 352987 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 353048 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 353109 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 353170 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 353231 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 353292 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 353353 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 353414 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 353517 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 353578 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 353639 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 353700 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 353761 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 353822 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 353883 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 353944 29 96.6 0 A............................ | A [353970] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //