Array 1 134768-138764 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVKJ01000055.1 Ligilactobacillus aviarius strain UMNLAv9 contig_9_180_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 134768 36 100.0 30 .................................... AACGATTAATATTCCGATGTCTTCCCAAAG 134834 36 100.0 30 .................................... TTAAACTCCGTTTGTGCTTCCGTATCACTT 134900 36 100.0 30 .................................... GCGCACCACGTATTTAAACGCGTTACCTTT 134966 36 100.0 30 .................................... AGCGTTTACGGCGAAAGCGCCACGAAACGC 135032 36 100.0 30 .................................... CTTTATGATAAATGGTTACATTAAGGAGGT 135098 36 100.0 30 .................................... TTATCACTTAGTTTTTGTTACTAAATATCG 135164 36 100.0 30 .................................... TCACGTTTAGTTGCAAAGCCTGATTTGTTT 135230 36 100.0 30 .................................... GCAACAATTTTAAATAAACAAATAGACCGC 135296 36 100.0 30 .................................... TCGCGGGCGACCTTGCTAAAAAAGGTGTCC 135362 36 100.0 30 .................................... TCTTGAAAGTGCGAATAAATCAAATTAATG 135428 36 100.0 30 .................................... AAATGAACGGCGTTGACTTACCGCAGATTA 135494 36 100.0 30 .................................... TAAGTCACAAACTGATGACCCGTACTATTG 135560 36 100.0 30 .................................... TTGAGAATCATTTCCATTTTACCAAGCGGA 135626 36 100.0 30 .................................... TAAGTCAACAACTTTTATCACATTTTTTGC 135692 36 100.0 30 .................................... CACCTTAGACGACTTGAACCGGAAACAAGT 135758 36 100.0 30 .................................... GGTACCCAGATGGTATTTCCGTTATTATAA 135824 36 100.0 30 .................................... TTTAGCGATTAGCGCCATGCGTCAAGTTAT 135890 36 100.0 30 .................................... TATTTAATGGATGATATACTTCACCTTCAC 135956 36 100.0 30 .................................... TTATTTACACGAAAGGAAAATATCAGATGG 136022 36 100.0 30 .................................... CGGGTGAGATACTTCATGATATTCCCAAGA 136088 36 100.0 30 .................................... CTTATTTCCGCTAAACGCTGTACCGTCCCA 136154 36 100.0 30 .................................... TCTTTGGATCAAAATTCTTCTTTGTGTCAT 136220 36 100.0 30 .................................... GGGCAAACCGTAACCTGCGCCGGAATAACT 136286 36 100.0 30 .................................... AAGACAATCCCGATTTGTCTTACACAGACT 136352 36 100.0 30 .................................... AGTTTTCAAACGCAGAAGCCACAACGTATG 136418 36 100.0 30 .................................... GGAAATGATTCTCAATCAAGCAGGTTATTA 136484 36 100.0 30 .................................... TAGTTGCTGAAGCATTTATTCCTAATCCAT 136550 36 100.0 30 .................................... TTAAGCTTATGGAGGTTTAAAGAATGGCAT 136616 36 100.0 30 .................................... ATATTAAAATGTTGTATTGGGTACCACTTG 136682 36 100.0 30 .................................... AAAGAAAGGAATGTATAGTGATTGAGTACG 136748 36 100.0 30 .................................... CCGTTGATATTGAAACGGACGCCCTGGTTA 136814 36 100.0 30 .................................... ACGACCAATGTGTCGATATTAGCATTAAAG 136880 36 100.0 30 .................................... GGTACCCAGATGGTATTTCCGTTATTATAA 136946 36 100.0 30 .................................... TTTAGCGATTAGCGCCATGCGTCAAGTTAT 137012 36 100.0 30 .................................... TTAAAGGCAAAAAAATCGTTTCCAACGCGG 137078 36 100.0 30 .................................... ACAACCAAGTTCACAATCTTTTGAGTATGC 137144 36 100.0 30 .................................... TGCGCATATAACTTAAAACTATCGCGCAAC 137210 36 100.0 30 .................................... TGCGCATATAACTTAAAACTATCGCGCAAC 137276 36 100.0 30 .................................... GCTTAGGAATAGTTCCAGTAAAGCCTAATC 137342 36 100.0 30 .................................... TTTACGAGCGCCCAATCACTTTCGTCCCTT 137408 36 100.0 30 .................................... AAATAAAAAAAGCGCCGTTCAGGCACTCCG 137474 36 100.0 30 .................................... TTTTTTAACATCGCGTGTTATAGTTAAGGC 137540 36 97.2 30 ..................C................. TTTGGAGAATGTAACTTTATACTTGTAAGT 137606 36 100.0 30 .................................... ATTGCAAGCTGTTTGCTGTCTGTTTTAATG 137672 36 100.0 30 .................................... CGCTAAACCCCTTGAGCGACGCGCTAAGAC 137738 36 100.0 30 .................................... CTACCTCTCAGCTTTTCGATGTTTTTCACT 137804 36 100.0 30 .................................... TTATTATCGTTTAACATTATTATATCACAT 137870 36 100.0 30 .................................... TATATTTTTGTGATTTCACACTTAGATAGT 137936 36 100.0 30 .................................... TATTATCAACAGTAGTAAACATTGAATCAT 138002 36 100.0 31 .................................... TTGCTTACTATTGGCAAACCGTTCAACCTTG 138069 36 100.0 30 .................................... ATTCAGAAGTTAAGGAGGGTCATGAAATGA 138135 36 100.0 30 .................................... TTTGCAAACTATCCGCCGTTTGCTTTACTT 138201 36 100.0 30 .................................... TCGTTACGGAATAAAATGCGCGATAATTAT 138267 36 100.0 30 .................................... TTCTGATTAATCAAATTGTGATTCGCGTAC 138333 36 100.0 30 .................................... GGCGGAAATGCACAATTAGGTGTTCAAGTG 138399 36 100.0 30 .................................... TCCCCCGAAATTTTTTTGCATAACAGTTAC 138465 36 100.0 30 .................................... TGCGTCCCCTTGAACATGCCCCGCAATGCG 138531 36 100.0 30 .................................... AATCAACCAATGAATTTTTATAAAGATGTT 138597 36 100.0 30 .................................... GTGCCACATTTTTCAAGGCACATCGGATAA 138663 36 100.0 30 .................................... AGGCTGTTGGATTGATAACCCAAGACAATT 138729 36 72.2 0 ....................TG.G..T.A.CTC.GA | ========== ====== ====== ====== ==================================== =============================== ================== 61 36 99.5 30 GTTTCAGAAGGATGTTAAATCAATAAGTTTAAGTAC # Left flank : AGTCAGAATTTAATGAGCAAATATAATACAGAATTAATAAATGCACTTGTTTCCTCAATTACGGATGAACAAAGAAATAAGATCAATAAATGTGAAAATGACTTATACACTGCTATTCAAGATGCAATGCTTTATATGGATTTGCCTTTAGAGGTTTCTTATGATGGAGATTTAAAGAAAGTATTTAAAAATAGTAAAATCCATTTGGCGCCTTCAATTTGCATGAATCCATATGTTATAATCGAAACAGATTTTAAATTACATAAAGAGTGTAATGATACTTCTTGTATTGGATTAAGTAACGTCGCTAATTACTTATCTCAGGACCAATTACAAGAAGTTGTCAAATTGAATGCTGAATTGAAAACCTCAGCTTTGATTATTGAATTTATAAAATTAGAAGATCTTAATTTTTATAAAAATTGTAATTGTTATTATATTGACGAGGACTTTGTTGATTGGCAGCCCTGAAATCATGAGAGCTTAATTATAAAATGCCG # Right flank : AATTTAGAGATAATTTTTTGTATTCGTGACAACTATAAACACATTTATAATTAAGCTAAAATTTTCAATTTCTATAAACATAATTATAATTAAACGGATTTTTTAATTTTTTATAAATGTAATTATAATTCTTCGATTTAAATTTATATTGAAACCGCCTCCATTACATCATAAAATTAAATTACAAAGGAGGCATTTTTTATGAATAAAATTTTAGTAATCAACTGTGGAAGTTCGAGTTTGAAGTTCAAACTTTTCGATGACCGAGGGGAAGCAGTCATTGCACGAGGGTTAGTTGAACGCATTAGCCAACAAGAATCACCAATCAAGATCAGGTATGGGGAACAGGTTGCGAGGTTTACCACTAACATTCCCAACCATACGACTGCATTGCAATTTATTTTCGATCAATTGATCAAGTTAGGAATTATTTCAAATTTAAATGAGATTCAGGCGGTTGGGCACCGGGTTGTTGCTGGCGGCGAATATTTTGATCGGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGTTTAAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //