Array 1 3762214-3761409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007523.1 Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2011K-0870 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3762213 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3762152 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3762091 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3762030 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3761969 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3761907 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3761804 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3761743 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3761682 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3761621 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3761560 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3761499 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3761438 29 96.6 0 A............................ | A [3761411] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3780449-3778346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007523.1 Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2011K-0870 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3780448 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3780387 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3780326 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3780265 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3780204 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3780143 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3780082 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3780021 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3779960 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3779899 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3779838 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3779777 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3779716 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3779655 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3779594 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3779533 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3779472 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3779411 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3779350 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3779289 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3779228 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3779167 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3779106 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3779045 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3778984 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3778923 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3778861 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3778800 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3778739 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3778678 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3778617 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3778556 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3778495 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3778434 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3778373 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //