Array 1 77379-76629 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOU01000019.1 Cronobacter sakazakii strain MOD1_LR733 LR733_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77378 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 77318 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 77258 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 77198 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 77137 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 77077 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 77017 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 76957 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 76897 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 76837 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 76777 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 76717 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 76657 28 85.7 0 ......................C.T.TC | T [76635] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 156220-157895 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOU01000007.1 Cronobacter sakazakii strain MOD1_LR733 LR733_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156220 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 156281 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 156342 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 156403 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 156464 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 156525 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 156586 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 156647 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 156708 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 156769 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 156830 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 156891 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 156952 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 157013 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 157074 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 157135 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 157197 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 157258 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 157319 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 157380 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 157441 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 157502 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 157563 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 157624 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 157685 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 157746 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 157807 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 157868 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184113-185972 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOU01000007.1 Cronobacter sakazakii strain MOD1_LR733 LR733_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184113 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 184174 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 184235 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 184296 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 184357 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 184418 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 184479 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 184540 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 184601 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 184662 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 184723 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 184784 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 184845 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 184906 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 184967 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 185028 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 185089 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 185150 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 185211 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 185272 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 185333 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 185394 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 185455 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 185516 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 185577 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 185638 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 185699 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 185760 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 185822 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 185883 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 185944 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //