Array 1 338-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRTS01000131.1 Lactobacillus helveticus strain M3 contig131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 337 29 100.0 32 ............................. GGCCGTGCCGGTATTTTAACCTGCTTGACAAG 276 29 96.6 32 ............................T ATCACCAACTGGCCAGTTGATAACGGCGCTCC 215 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 89.7 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : CAGCTTATCATATAGATAAGTCATCAACAGGAAAAATTATAGAGCCAAAAAAGTTCTCTCTTTTTTAGTACCTATTATTGATTTTTGTTGTCACCATTATCATCAAAATCAAAGCTTTGTTCAGATTCAGAATTATCATCTGTATTATTATCAGCATTTAACTCATCAGCAATTTCAGCTGTATCGAGCAGTGAATTTAACGAGGTAGGTTTGCTATCTGAACATGGCTCCAACTCATTGTTTGGACTAATCAAGTTAGAGATTTTTTCTGGCAATAGATCAACTTTAGCATCAATTTGTTTTATCAAATCAATAAGCTGGTCATGATTATCAACTTGCAGACGCAGGTCTTGTACTTCTTTAGTAAGCGAAGTAATCAATTGCTTATCTGACTGTTTCTTAGCCTTCTCCAACTTAAAACGCTCAACAATTGCACGTTTA # Right flank : AAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTCGTAAATTGCAATAATAAATTGAACGCTTAAGCTGCTTGATAGATT # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13795-10730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRTS01000141.1 Lactobacillus helveticus strain M3 contig141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13794 30 100.0 36 .............................. TCAACACCGCCATGTTTCATACATTTATGAACAAAA 13728 30 100.0 35 .............................. TCGTGTAGCTTAATCCAAGATCAGCTTTGCCAGCT 13663 30 100.0 36 .............................. GAAGTGATTCCAACCAGAACCAATCTGTTTGAACAT 13597 30 100.0 36 .............................. ATTAATAGAAGAATGATACTTCTTTACCAAATCCTT 13531 30 100.0 37 .............................. ATATTGGCGGTCTTTTTAAGGCAAAAAATTAATTTGA 13464 30 100.0 35 .............................. ACAGTTATGGTGGCTATTATGTCTATTGTGTCTAT 13399 30 100.0 37 .............................. TAGCTATGGTATAGTATATATAGTTAAAAAAGAAGAA 13332 30 100.0 36 .............................. TGACGTAGGAACTAGGTATGTTAGCTGTAAAAGCAA 13266 30 100.0 35 .............................. ATCTACAATAGTAGCTGGGATAACAAGACGTATAG 13201 30 100.0 37 .............................. AATGTATACCAGTCTATTGGTGGCATTGCTCGTACAG 13134 30 100.0 35 .............................. TTAATTGCAAGATTTACTCTTGTGCGACTTTCACC 13069 30 100.0 36 .............................. AAATATTGGTGTTCCAATTCTGGGACTGGCTTAATT 13003 30 100.0 35 .............................. GGCTAAAAGCTCGAAAGAAGTCGAAGGACTAACCA 12938 30 100.0 39 .............................. TTGCATAAAATGCGTCTCTTAATCTTGTCTTTGATTCAG 12869 30 100.0 36 .............................. TATTTTTGTATGGAAAAAGTAAGCGATTTAAATAGC 12803 30 100.0 36 .............................. GCATAAATAGTAAATTCTTTCATTTTTTGTACCTCG 12737 30 100.0 35 .............................. TCAACAAGCTTGATGGAGTTTAAATCCCGACCACC 12672 30 100.0 36 .............................. AAGCAAAATTGCAAAGTATGGTTACCAAAATCTTTA 12606 30 100.0 36 .............................. ACAACTAACGCTGCAAACAACGCACTAAGAAAACAA 12540 30 100.0 36 .............................. GTGCAAAATAAAAATATGCCTAAACGTTATATCAAA 12474 30 100.0 36 .............................. CTATCAAAGGCTTTACTCATGTTGGCTCTGGTCTGC 12408 30 100.0 37 .............................. CCAATCAAATCATCATTAAGGAAATCTGCTGCAAACG 12341 30 100.0 35 .............................. ATTTAGGACTGTCGTTGATCATCATCGTTAGTCTG 12276 30 100.0 35 .............................. CATTAATAGCCGTTGTCGTCTTACTTCTAAAGTGT 12211 30 100.0 36 .............................. TTCTCTGGCTCGGTAGGCTGTGTTTGTGCCGTAGTT 12145 30 100.0 36 .............................. TGCTATAAAAAGCATCTCTTAATCGTGTTTTTGATT 12079 30 100.0 36 .............................. TGTAAGTGCTTGGTATTAATACCAGCAATGACGTAA 12013 29 96.7 37 ....................-......... TCATGGCTTAAAATCCTAATAGTACGAGTATTGTTAA 11947 30 100.0 36 .............................. CTATTCCGACTTGACCCAGATGAACTCACTAACCAC 11881 30 100.0 36 .............................. CAAAAATGGAACGGGTGGGAACGGTTTAATGAAATT 11815 30 100.0 36 .............................. TGAAATACTCTGAATCATGTTTAGCTTGATCGCCTG 11749 30 100.0 37 .............................. AGTGATTTAAGCTTGACTCAAGGTGATGATAAGGACG 11682 30 100.0 36 .............................. GTATTCCTGTGGTACTGATTTGGTAGTTCAGCCTAT 11616 30 100.0 35 .............................. AGTTTTGACGGTTGGAAGTTTAGCAACTGGATTGA 11551 30 100.0 36 .............................. CTTTGATTCATGAAACTTTGAAGCTAGATGAATGGT 11485 30 100.0 36 .............................. AAAGGCAATAAAAAGCGCTATGTCCCACTTGATGAC 11419 30 100.0 36 .............................. ATAGAAGGCGATGCGGGAGCATATTCAAGCGGTGAG 11353 30 100.0 36 .............................. GATTATGCGTACGGCAATAACTCATGGCTACAAGTC 11287 30 100.0 36 .............................. TATGGCGAAAAATTAGAAGAAAATTTTGTCAAAATT 11221 30 100.0 35 .............................. TCTATCTATATCCTTTCTTTTGGTCGTTGGACTTT 11156 30 100.0 36 .............................. AGATTTGTGGGCGCTTTAATATTGAAAATGCAGAAG 11090 30 100.0 36 .............................. AATTCACGATTATATACTTCATCAGGTGCAAGACTA 11024 30 100.0 35 .............................. TTTCAAAAAAAGTAGAAAACTACAAAGAGCTTGCT 10959 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 10893 30 90.0 38 ............T.............G..T TTCTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 10825 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 10759 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ======================================= ================== 47 30 98.9 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //