Array 1 190666-189252 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNB01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain BCW_1590 NODE_2_length_493196_cov_0.603001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 190665 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 190604 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 190543 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 190482 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 190421 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 190360 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 190299 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 190238 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 190177 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 190116 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 190055 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 189994 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 189933 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 189872 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 189811 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 189750 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 189648 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 189587 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 189526 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 189465 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 189404 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 189343 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 189281 29 86.2 0 TAA.........T................ | A [189254] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207570-206810 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNB01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain BCW_1590 NODE_2_length_493196_cov_0.603001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207569 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 207508 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 207447 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 207386 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 207325 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 207264 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 207203 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 207142 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 207081 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 207020 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 206959 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 206898 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 206837 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //