Array 1 164065-164429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJFW010000003.1 Campylobacter coli strain 2016/0429H NODE_3_length_213037_cov_17.387603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 164065 36 91.7 30 .GG...............T................. TGCCTTTAAAAGCTCGCAAGATGCTATGAA 164131 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 164197 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 164263 36 100.0 30 .................................... TAATCATAATACACTCTTGTTTCAAAACTT 164329 36 100.0 29 .................................... AAAGCATCTCTTAAATCACTATCTTGCAA 164394 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : TTCAAAACCAGTGGGGCTAAATCAATTTAGGAAAAACACAAACAGAACAACTATATAAGAAGCGATAAGGAGACACTTATGAGGATCGAGCATTCACAAAATTTTTTACATAGCAAACGCCTTGTGTCGGAGTTGCTATCAAAAAGCAATATAACAAGCGAAGATACTGTAATTGAAATAGGCCCCGGTAAAGGAATAATTACGGAAGAATTATCAAAGAAATGTGGACAAGTTATAGGAATTGAATATGACAAAGAATTAGCACATTTGTTGCAAGAATCTTTCGCGAACAAATCAAACGTCAAGATTATCGAACAGGATTTTCTTAAATACAAATTGCCTAACAATGGAGTTTACAAGATTTGTGCGAATATTCCTTTCAATTTGACTGCGGACATCATGAAGAAGGTGTTGGAATTTGAAAATCCTCCAACTGATATTTACTTTATTATGCAATATGAAGCATTTTTGAAATACGCTGGAGAGCCGTATTATAACGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 165669-166034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJFW010000003.1 Campylobacter coli strain 2016/0429H NODE_3_length_213037_cov_17.387603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 165669 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 165735 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 165801 36 100.0 30 .................................... TAATCATAATACACTCTTGTTTCAAAACTT 165867 36 100.0 30 .................................... AAAGCATCTCTTAAATCACTATCTTGCAAA 165933 36 100.0 30 .................................... TTATAGTCGTGAAACAAGGGTTGCAATAGG 165999 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACGCATTTGCAAACAAATCAAAATCTCAATGGACTCGTCTGTAACCGCTATTGCATATGAGGGATGGCTAAATTTATATGATGTGTTCTTGAAATTCGTTTCGAGCGACAAGAAAGAAATTATTAGAGGGTCGGAGAAACATTTAAAAAACAGTCAGAAGAACCTGCACAAAATACATCGAAATCGCAATAACGGTTATTCAAAGACAAAAAGTTATAAAAAAAATAGTGAAAAAAAATAATGAAAAACGGATATTATTTATTTGCCTATGTTGAGATAAACAAATATGCTAATTACTACCAAATTGATACTAAAAGGCACGATCAAAATATTTCATTATGGGAATATTTTGATGGAAATTTGACATTATTAAGATATTGGGAACTTGAAAGGCTATCAAGAATTAAACATCATAACAAAGCATTTTCGACAAAAGAACAATTCATAAAATTTGTTAATCAGCTTTTATCTCAATTTGATTTAGATGATTCTAAATTGGT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //