Array 1 2383580-2382434 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABAK02000001.1 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 gcontig_1113067241854, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 2383579 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 2383518 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 2383457 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 2383396 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 2383335 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 2383274 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 2383213 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 2383152 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 2383091 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 2383030 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 2382969 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 2382908 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 2382847 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 2382768 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 2382707 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2382646 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 2382585 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 2382524 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 2382463 29 96.6 0 ............T................ | A [2382436] ========== ====== ====== ====== ============================= ================================================== ================== 19 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2400866-2399740 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABAK02000001.1 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 gcontig_1113067241854, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2400865 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 2400804 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 2400743 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 2400682 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 2400621 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 2400560 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 2400499 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 2400438 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 2400377 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 2400316 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 2400255 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 2400194 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 2400133 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 2400072 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 2400011 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 2399950 29 96.6 32 .......T..................... CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 2399889 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 2399828 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 2399767 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //