Array 1 3512-3337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFM010000001.1 Ligilactobacillus ruminis strain LKV-472-APC-10 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 3511 31 90.3 40 ...T.T....A.................... ACCTTGAAAACTTGACAAAAATAACTTTTTATCATAAAAT 3440 31 100.0 42 ............................... ACTTTACTTATAACTTATAAGTGTTATAATAAAAAATGCGGC 3367 31 93.5 0 ...T....................T...... | ========== ====== ====== ====== =============================== ========================================== ================== 3 31 94.6 42 CATCACCTATCTCCGAGTTAAGGAGACGAAA # Left flank : TTTATTGGAATTGATTGGTTTTTTCAATCAAAACGGTTGTTCCGACAATCATCATGTATCTTCTGTGTAACGTCATAGTGATTTTATGGTTATCAGATCTTTGAGAAATTGTGCGCTGAAAGCATTCTGCACAAAATAGAATCGATATTTTTTGAGTACCGTCATTCTAAAAAGTACTCTGAAACTTATCAAAAAAGCAAACAAAGAAGAAAAGGTGAAACTGCATGTGAATCGTAAAAGGAACTGATTCAAGAATTTTGTGAGAGAAAGCGTGAGCTGAATTATCAAAAAGGATTAACTGAAGTAAATTTGCAATTGAGAACATATCTTTTAATATGTATTTTATAATACCAACGTGGGATTTTTTCCCTATTTTATCCGTCATTACTTGGTTATGAAATGGACAGGTCTTTGAAAAGCAGGGTGTTTCTGGCCTGCTTTTTGGGCGTTATTTTATGGACGTAACCCCCATTCTGATGCCATTTTGATATTTGATGAAT # Right flank : GCATCGTAGGAAGTCATATCGATGTAATCTATCGCTTCTAGACCATCCCCACAGGCATCTGCATTGTAATGTTCCTTGACAGGACTTTTTTTGACAATGTTTTTTAAAGCATTCTCGTTTTTTTACAATCGGTAATCTCATAATGTAATTGTTATAATTACAATCATTTTCGTGTGCTAGGGTCCTGTTTCATTTTTGTAAATCACTATTTGTTTTAATCTTTCTTCTATATGATACATGTAACAGCAAAAACAAAACATCCAAGAGACGGAAGGAGAACATGTTATGAAAAAAATATTAGTAGTTTTATTCTCGCTCACATCAATATTTGCTTTTGCAGGATGCGCCTCATCCAATAATAAAGCAGCAGAAGATACAGAAACTAAGACACGGGAAGTTGTAACATCAAATGCAGATGACAATGATGATAATATCAGTAACACAGAAAACTCAGTAGAGAATGCGAACGAAAAGGATTATGATTTCTCTTCTTATGAAAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCACCTATCTCCGAGTTAAGGAGACGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 64378-61369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFM010000001.1 Ligilactobacillus ruminis strain LKV-472-APC-10 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 64377 36 100.0 30 .................................... TCATCACGCCATCGGTCGGCGGGATGACCG 64311 36 100.0 30 .................................... CTCTGGAAAGGTACGTTTCCAGATTAGCCT 64245 36 100.0 30 .................................... TTATAGTATATATGTCAACCCCCTGATAAA 64179 36 100.0 30 .................................... TGCCAGTCCCGTTTCTCTGGCAATAGTTCT 64113 36 100.0 30 .................................... GTTTCTTAGCGTCAAAATCAACGCCCGTCA 64047 36 100.0 30 .................................... CAACGAATTCACGGTCGAAGATATCACGGT 63981 36 100.0 30 .................................... ATCACAACGGAAACGCAAGTAAACCGGTCA 63915 36 100.0 30 .................................... GTACAGGAACGCCATTAGAGCGCAAGCTGT 63849 36 100.0 30 .................................... GTTAATGAAATTATGAAGAGTGGTTGGAAC 63783 36 100.0 30 .................................... CAATGGTATCAAAACCAACGTCAAAAACGC 63717 36 100.0 30 .................................... TGTTTCTAGCGCAGACGATTCGGTCCGTTT 63651 36 100.0 30 .................................... CTTGAATTTAGTAGACTTGCACTTCGTCAG 63585 36 100.0 30 .................................... ATTGCTAAATGAAAACAAGCGAAGCACAAA 63519 36 100.0 30 .................................... TGAACAGCAGCTTGATGTTTTTCGATACGA 63453 36 100.0 30 .................................... AACTTGACGATGACTTTAACGGCATGGAAG 63387 36 100.0 30 .................................... AAGGAATCGTCTGCAAAATGCTCGAAGGTT 63321 36 100.0 30 .................................... CCACAAGGTAGGAGAATCTACAAAACTAGA 63255 36 100.0 30 .................................... TTGGGGTGATTATATGCGTGACTGGATTGG 63189 36 100.0 30 .................................... CAAATCAAAGCCTTCTCCAAGACCACCATT 63123 36 100.0 30 .................................... TTTGCATACTGGCAGGACGGTTGGAAGCCT 63057 36 100.0 30 .................................... CTAAGTCAGAAACAGACGCAAAACTGGGTA 62991 36 100.0 30 .................................... ATCAATGGTGGTTGCCTGGTGTTAATCGCA 62925 36 100.0 30 .................................... CAACGCACTCATAATGGTCACGTTTCAGCG 62859 36 100.0 30 .................................... TAATGACAGGGAAATACTACGCGGTATTAT 62793 36 100.0 30 .................................... TATCAGACCTTATCCACCCGACAATGTTCG 62727 36 100.0 30 .................................... GTACAGTGGTGGAGCAGGGTGGAAAGAAGT 62661 36 100.0 30 .................................... TTTGCGGTCGGTTGTTGTCGCACCGCTTCA 62595 36 100.0 30 .................................... AGGGTGCTTGAGCAGTTTCCCGAACTAAGA 62529 36 100.0 30 .................................... ATAGGCGATTCTAAGAAAATACGATGAATT 62463 36 100.0 30 .................................... ATACAACGCTTGCTCAAGAGGTCGCCGACA 62397 36 100.0 30 .................................... TATTGCCGACTACAAACTTTGGAACTACAT 62331 36 100.0 30 .................................... CTTTCAAAGGATATGTATGGTCAAGACAAA 62265 36 100.0 30 .................................... GCAAAACATCACCTGTACCGCATGTAATCT 62199 36 100.0 30 .................................... TGTTGATTGCGTGGTAGTCTTACGCCCTAC 62133 36 100.0 30 .................................... AATCGCACGATTTATCGAACACGAATTGTT 62067 36 100.0 30 .................................... AGTGTCCGATTCTTTGCGCGTCGAGGCGAA 62001 36 100.0 30 .................................... TCGTTAAGGTTGAAGGAACCTCGGCAATTA 61935 36 100.0 30 .................................... GCCGATTTAATGCCGTTCCACGCTCCGCTT 61869 36 100.0 30 .................................... CCGCATCCATGCCCGCCTTGTTGCCTAATT 61803 36 100.0 30 .................................... TTTTGAGGGCGGGATTGGATGAGGGGATTG 61737 36 100.0 30 .................................... AAGTTAAAAAAGGCCAAGGCGAACTGTCTG 61671 36 100.0 30 .................................... ATTGGAACAGGCCGAAGAAGGCTACTCAAT 61605 36 100.0 30 .................................... CTGCGCTCTTGTACGTCCGCATTGGCGGCA 61539 36 100.0 30 .................................... GGCTGACCTCTTCAAACAAGCCAAGCAAGC 61473 36 100.0 33 .................................... CTTAGGTGAATTTGGATTACTCCCGTATGCACG 61404 36 80.6 0 .......T.......T....A........C.CA..A | ========== ====== ====== ====== ==================================== ================================= ================== 46 36 99.6 30 GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Left flank : TGGAAATAGATGTGGGCAAAAAATATCTCAATGAGCTTTTAAAAAAATCTGTTGAATTCATGCCTGACGAATTGAGAAAACAAGTTTACGAATTGGAGAGACAAACTGCAACGGCATTACAGGATTCAATATATATGTTTGACCTGCCTCTTATCGTATCAATGGATAACGATCTCAAAAAAACATTAAAAAATTATCATTTTTCTGTAGATTCCAGTATAGCGTATGATCCGTGTGCTATAATTGAAACTGACATAAAGATTCATGCTGAATGCGCGTTAAAAAAAGCTATCGGCGTTAGCGGGTTAGCTACCTATCTAACACCCGAAGAATTCAGTTATATCAAAGATTTGGTGAAGGAAATGGATGTCCCTTTACTGATGATTGATTACAATGTTTCCAGTTGGAAAAGTTATTTCGATAATTGCAACGTGATGTATATTGACGAGGACTTCATTGATTGGCATTAACTAAAATTAACTGTTGATTAAAAAGAGACA # Right flank : TGTGTAAATTAAGAAGCGACCAGTTATCAAATGATAATCGGTCGCTCTTTCTTATGTTCTAACATTAGCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCGACTGACGAAACCATAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGGGCTAAGATTGCCTGTTTCAACGCATCCGTCTCCTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACGCAGCCCAGTGCGAACCTGTTCGTTGTCGTTTCTGTATCTTTCATGCGAAAAAGATATTTGGAATATGGTTGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCGATCAGGTTGCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCAGTCCATCCAACTGATGAGCGCATTTGCGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTATAGATGTGGATCAGTTCTCCGAGCGAAATGTGTTGCGAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2014-2140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFM010000086.1 Ligilactobacillus ruminis strain LKV-472-APC-10 Contig_86, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================= ================== 2014 23 100.0 29 ....................... ACGTTTTGCCCGTAACCGAGAGCCGCCTT 2066 23 100.0 29 ....................... CTATTTTGCCCGTAACCGAAGACTGACTT 2118 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================= ================== 3 23 100.0 34 TTACGGGCAAATCCCAAGAATCG # Left flank : AAATCTGTGGTGCCAGAAAAATTCCGACCAGCGTCAATACAAGACTCGAAACAAGTCCCAGTGCTACGGTCGTGTGAACTGCAAGCGATGTCATCTTGTGATCTCTTGCTCCGATAAAACGCGCAATCACGACGCTGCATCCAATCGTCAAGCCCTGAATGAAACCAATCAGCAAAAAAATAAGATTCCCCGAAGAACTGACGGCAGCCAGTGCTGAACTCCCCAAAAAATTCCCCACAATCAGTGAATCAGCGGTGCTGTACATCTGTTGAAACAGACTTCCGAAAAAAATCGGTATCGCAAAATACACAATTTTCTTCTTGTACGAACCTTCTGTCATCACGGCATTATCATTTTTCAAAAAATCCAGACCTCCAATCAAATTCAACAATCCTCATTATATCAGAGCTCATGAGATTTTAATGTTATTTTGCTCAAAAGGGCAAAAAAGACTTCTTGATGTCTGCAAAAATCAGATTGATTATCTTTGTCTTCCGTAA # Right flank : AAGTCAAGTCCTAATTTGTGTGTAAAATATTTTTCCCAGGCACAAGTTGTGCAGGGGATGCGAATGCATCCATGTCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACGGGCAAATCCCAAGAATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //