Array 1 12240-12661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIW010000088.1 Clostridium sp. DJ247 NODE_88_length_12708_cov_48.776186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================== ================== 12240 30 100.0 74 .............................. TACACATAAACCTGTATAACATGTCCACAAATATAAGTTGAACCTTAACATGGGATGTATTTAAATACAATGTC 12304 30 100.0 74 .............................. ATACAATGTCGCTTCTTTCTATTCTACTAATAGCGTCTGTTGAACCTTAACATGGGATGTATTTAAATAAGAAT 12370 30 100.0 75 .............................. ATAAGAATATATCAAAGCTATAAAGGATTAGGGCCTAGTTGAACCTTAACATGGGATGTATTTAAATTTGTACTT 12436 30 100.0 75 .............................. TTTGTACTTTGTGGAATGGCGATTGTCGCCAGAACAGTTGAACCTTAACATGGGATGTATTTAAATACCTCAGAT 12501 30 100.0 74 .............................. TACCTCAGATGGTATAGCACGAATAGAATCTAATATCGTTGAACCTTAACATGGGATGTATTTAAATTTTCATA 12566 30 100.0 75 .............................. ATTTTCATAAATCGCTTGTTTAAAAGGATCATCTTCAGTTGAACCTTAACATGGGATGTATTTAAATAACTAGAG 12632 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================================================== ================== 7 30 100.0 75 GTTGAACCTTAACATGGGATGTATTTAAAT # Left flank : AAAAGTTCCTATGATATATATTATTCTTTTGGCCCTAGTATTAAGAGGTATGAATATAAAGGTATGGTCACCTATATGGAATGCATTAGATTCCATTGGAAGTGCAATGGTTCCTATAGCATTAATTTCACTTGGGGCCCAGCTTGCTGAAACAAAGTATTCTTTAAGAATACCTAAGGTATATTTTTCAAATTTTATAAGATTAATTATAAGTCCTATTATGGCCTATGCTGTTATATTACTTCTAGGGTTGAAAGGAACAGCTGCTCAGGTTGCTATTATATCCTCAGCGGCGCCTACTGCTGTAACTTCAGTATTACTTGCTATTCAGTATAATAGTGAACCGGACTTTGCATCGCAGACGGTATTTCTTTCAACTATTATCAGTCCTATTACAGTATCTTTGGTAATTTCTCTGTTTGTAGGAAAAGTTACATAATATTTTACCAACCAAAGCTTAAAGGATTATAATGAAAATAAAGAATGGCTATTTTACAGTG # Right flank : TAACTAGAGAAAGAGCATTTTTACATGAAGACTTTGGTTGAACCTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 2-357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIW010000012.1 Clostridium sp. DJ247 NODE_12_length_92440_cov_34.615236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2 30 100.0 35 .............................. AACTAGAGAAAGAGCATTTTTACATGAAGACTTTG 67 30 100.0 36 .............................. ATGTCGATTAATGAAATATGGGATTAAAATAGGCGT 133 30 100.0 34 .............................. TCTAATGCGTCATACGACAACCACCCTTGTTCTA 197 30 96.7 35 ................A............. TCACCTCTACAAACAACAGAAACTTTAACATGAAA 262 30 96.7 36 ................A............. TCTAAACCCTGTATTTCCAACGTTACCTGTGTTATA 328 30 80.0 0 .......................ACAGG.G | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 95.6 35 GTTGAACCTTAACATGGGATGTATTTAAAT # Left flank : AG # Right flank : GACATTAAAACTCTTGAATGTATACTGAAAAAATTTGTAATCAGCAGCATAAGTTATTTTGATGTAGCATGAAAAGAGCCAGAGAAGGTTTATCATGCTTTTATTTGATGATTTATTTTCAATGTTTGAAGAAATTATAATGAAAATGTAAAATGTCTATTGGAGTTAGCTTTATATGTTCATCACTTTTTTAACTTAATTTGAAAATGTTAAGCTAATAGCTTCTTATTTTATTTTAAATATGTAATAATATTTTATATGTATTAAAAATTAGAACGTAATTACATGGATGTAGGAGTAGAAATTATGTTTAAAGATATAGATAACAAAAAGAAATTATTAGATAGTAAGAGACCATTAAATAAAACAGCGGTAGAAAACTTAAAAAAATATTTTGATGTAGAACTCACCTATAATTCTAATGCTATAGAAGGAAATGCATTAACAATAAGTGAAACAAAAGTTATTTTAGAAGACGGATTAACTATTGGAAAAGGTAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 11243-12915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIW010000012.1 Clostridium sp. DJ247 NODE_12_length_92440_cov_34.615236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11243 30 100.0 34 .............................. TTGCAAACTTTATTAATGTTATCATCTTCATCTT 11307 30 100.0 36 .............................. AGGATTGATGGAAGTTATAGTGATGGGGCTGGTGTA 11373 30 100.0 35 .............................. GATATTTGACAATAGTGGAAATTTAAACGTAAAGG 11438 30 100.0 34 .............................. TTGAACTGACTTTCTGTAAATTCCCATTTACCAT 11502 30 100.0 35 .............................. TAACTAAACACTCTTTAAAACTATATATAGACCAA 11567 30 100.0 36 .............................. TCTTGCTTTGTCTTAGTTTCAAGTAAACTTTCTTCT 11633 30 100.0 36 .............................. AAAAATGATATATTCTATTATCGAGGGGTAATTAAT 11699 30 100.0 37 .............................. ATGGGGTTGCTCTTACAGTTGATGCTATTGTTGCTTA 11766 30 100.0 36 .............................. TTAGATAGGTTACTTAGTAATGAAACATGGGTGTTT 11832 30 100.0 36 .............................. GAAGGAAAAGTTATTAATCTCCCTAACATTAATATA 11898 30 100.0 35 .............................. AGTTAACTGAGGAGCAATTCCAAAGTTTAAGGATT 11963 30 100.0 36 .............................. TCTAATATAAGACCAAACTCCTTAAAATAACAATCT 12029 30 100.0 37 .............................. ACTACGTAGATATCTTGACCTTGTTTAATTGCTTTAA 12096 30 100.0 35 .............................. CTCAAAAATTTTCAAGATGTGAATATTTGTAAATT 12161 30 100.0 36 .............................. TCAGTAACATGAGAATAGGTTTCCATAGTCATTTTA 12227 30 100.0 36 .............................. TGCAGCTTGTCTATGCAGTTAGGATCTGCAGTTAAG 12293 30 100.0 36 .............................. AAACTGAATACCTATCCACAATTAGAAGACTATTTA 12359 30 100.0 35 .............................. TACGTGCTGCTATCTCCTGTAGGAATTGCTGGTGG 12424 30 100.0 36 .............................. AGTACAGAATGGCGAAACAAGACCGGATAACTTATT 12490 30 100.0 35 .............................. GACAAAGGTATGATGAAAGTACATCCATTGGAGGT 12555 30 100.0 36 .............................. TTTTATTAAAGGACCTCATACTACTACAAATTCAGG 12621 30 100.0 36 .............................. AGTAAATTATAATAAAAAAGGAACTGTAACAGGAAT 12687 30 100.0 36 .............................. GCATCAAATGATGTTAACAATCCTGTTAAAGTAAAA 12753 30 100.0 35 .............................. TGAACAAAGCGAATTGTTTTTTACGAACTTGGGTT 12818 30 100.0 38 .............................. TCATACCTAACATTGAAAGTTCCTGCATTATTTTCTAA 12886 30 73.3 0 ........TC.....AA........C.TTC | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.0 36 GTTGAACCATAACATGGGATGTATTTAAAT # Left flank : TTTTCTCCATTTAGTTTAAAGGAGATGATGTAAGTTGGGAAAGATAGAAAATTTTAATTATGCCTTTGTTTTCTATGATATAGGTGAAAAAAGAGTACAGAGAGTTTTTAAAGTTTGCAAAAAATATTTTAAACATCATCAAAAATCTGTTTTTAGAGGAACCATAACCCCGTCTAATCTTATAAAACTAAGAGCAGAATTAAAGAAAGTTATAGATGAAAAAGAGGATTTTGTATCTATAATAAAGCTAATGAATGAAAAAAGCTTTAGTGAAGAAACCTTAGGATTGAATTTAGCAAATAGTGAATCACTAATTATTTAATTTTACCAGCTGCATTAAAAATAAAAACCCCTATAAAGCTATGGGATTTAAGACTTTATAGAGGTTTTTTGTTAACATTTATAAAAAATGAAAAACGGCTGGTAAAATTTTTAGAAAATCCTTTGTTTCTAGTGGTTAAAGGATTATAATGAAAATATAGAATGGCTATTTTGTAGTG # Right flank : CTTGACTGCCAAAATGAGGGATAAATACTTATTGTATATGTTATAATAGTATATATATTGATATATTTTAGCTTAAGGATGGGTTTGGTTATGAATAAAAAGGAATTATTAAATATTATTGAAAATGGAGAAAATTTATATATAGAATTTAAAGAAGAAGGCATAAAGGCAAAAGAACTAGCAGAAGAATTTGTAGCTTTTGCTAATGGTGAAGGCGGAACAGTATTAATAGGCATATCTGATGATGGAATTATAAAAGGAGTAACTGATAAAAACATAGAAGAAAAGATTATGAACATTTGTAGAAATAACTGTATTCCTAATATAATTCCTATTTATGAATATATAGAATTTGATGAATTAAAAGTCGTAGTTGTTACTATTCCTAAAGGATTAAACAAGCCTTATTATACTGTTGATCATAAATATTATATAAGAGTAGGTACTACAAAAAGAATCGCTTCAAGAGAAGAACTAATGAGGTTATTTGAAGCTAATGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCATAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 15442-16652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAIW010000012.1 Clostridium sp. DJ247 NODE_12_length_92440_cov_34.615236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15442 30 100.0 34 .............................. AGAAAATTTTCGTCTAATATGTAACTACAATCAA 15506 30 100.0 35 .............................. ACGGACTAAAGATTTAATTATTAATATGGATACAA 15571 30 100.0 36 .............................. AGGATATATACCGGAATTAGAGATTGGAGAGACAGT 15637 30 100.0 35 .............................. AAATTAATGTTTTTAGCTACAGAAGGGGAGAAAAA 15702 30 100.0 36 .............................. TAAACAATGCAAATTGCTTCTTACGAACTTGTGTTA 15768 30 100.0 36 .............................. TTAAATCTTTTGGACATACACCTATTCTATATGCAA 15834 30 100.0 34 .............................. GCTAGTTTTACTAAGTTTTGTAAACTAGGCTCAC 15898 30 100.0 36 .............................. AGTTTTAAAGGATTTTTAATTTCTAAATATACAGGA 15964 30 100.0 36 .............................. ACCGTTACAAAACCATTATTTTTCCAATATTTTTCC 16030 30 100.0 36 .............................. TAGTAACAACCTCAGGCGGAAGCAAACTAACAGCAA 16096 30 100.0 36 .............................. TTAGAAACTAAAATTCGAGAAACTGAAAAGAATTTA 16162 30 100.0 36 .............................. TATTTATCTTTATTTTTATCTATCATTTCTTTTCTA 16228 30 100.0 36 .............................. TTGCACAAATTTTTTAAACTCACAATTAGCAATATC 16294 30 100.0 36 .............................. TTTAATTGCATTTCTACACTTGTATTACTGGATTCT 16360 30 100.0 36 .............................. TAAGCATGTTTAACAGGTTGCCAATTTGCATCATTG 16426 30 96.7 37 .................T............ AAAGCCTTATCCAATTAATTTCACCTCCTTAAAATTA 16493 30 100.0 35 .............................. ATGTTAGTTCAGATAATAGTAACGTAGGTCTATTT 16558 30 100.0 35 .............................. AGAAAGTGAGAGGAGTACCTAAATGTTTGAAAATT 16623 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.8 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : GATGTAAATAAAATACCAGAAGAGTTATCAGAAGATGAAGCCGTAAAAAAAGCAATAGAAAAACTAGACATAATGTATTTAGACAGTGAAGAAAGAGAATTATATGAAAATGAATTAAAGAGATTGAGAATTCAAAAGGCAGAATTAAAAACTGCTGAAAGAAGGGGAATTGAAAAGGGAATTGAACAGGGAGTCGAGAGAGAAAAAATAAATATTGCTAAAAATTTATTAGATGTATTAGATATGGAGACAATAGCAGAAAAAACTGGATTAAGTGTAGATTTTATAAATAGCCTTAAAAATCAATAGAAATATCTATATATTTTACCAACTAAAGCTTAAATAAAAATCCTTTTAATCCCTGTATTTATAAGAGATTAAAAGGATTTTTTAGGTGTGGTTTTAAAAAGTAAAAAACGGCTGGTAAATTTTTTAGAAAATCCTTTATTATGAATGCTTAAGGGATTATAATGAAAATATAGGATGGCTATTTTACAGTG # Right flank : TCAATGTCCAAGTATTCTTAGGGACTTAAGAGGATGTAAACAAAATACCAGAGTAACTGTCAGAAGATGAAACGGTAAGAAAAGCAATAGAGAAACTAGAGATAATGTATTTAGACAGAGAAGAAAAAGAACTATATGAAAATGATTTAAAGAGACTTAGAATTCAAAAATCAGAATTAAAAAACGGCTGAAGAAAATGAGAAAACAATAAAGCTATACAGATAGCAAAAAATTTATCAGCTGTAAATGCATTTAAAAGAGCTGCACTCAATAATTAATTGAGGCACAGCTCTTTTATGATTATAAGCATTTTTAACAGGTTAGTTTTTTAAGCATTTAATCTGAAATTATATCTACAATTTCATTATAGTTTTTTCTATAAATCATACGCTGAATATTTAATTCTAAGTTATTGCCTGTTCCAATGAACTCTAAAGTTCTAGTATTTATATTGGAATTTTTAGTATTATTTTCTGGAATGGTTTTGTTAAGATTTATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //