Array 1 160917-159987 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AJVH01000029.1 Corynebacterium diphtheriae bv. intermedius str. NCTC 5011 contig29, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	====================================	============================	==================
    160916	    35	  77.8	    27	.GACAC.C..-...................A.....	TCCTACGGCTCATCTCCGCTGGCGCGG 	
    160854	    36	  97.2	    28	G...................................	TTGGCCGCGTCGGTAGCCATCTGGGACG	
    160790	    36	 100.0	    28	....................................	TCAACCGTGAAAAGGCGTGGAGAATGCT	
    160726	    36	 100.0	    28	....................................	CCCTCAACCTCCAGGGCTTCACCAATAG	
    160662	    36	 100.0	    28	....................................	GACCACCACGCCCCATCGTCGATCACTA	
    160598	    36	 100.0	    28	....................................	TGCGGCGCAATACCAGTGTCGCTGATAT	
    160534	    36	 100.0	    28	....................................	TACGCTCAGCAATACCCAAAACCCACGA	
    160470	    36	 100.0	    28	....................................	GATGATGTCGTCGAGGTGATTGGCGAGA	
    160406	    36	 100.0	    28	....................................	ACCCTCACACAATGGTGAAGATAGGGGG	
    160342	    36	 100.0	    28	....................................	CCATCACAGGAAAACCTACACATCACCG	
    160278	    36	 100.0	    28	....................................	AGAACGTTATGTGTCAAGTGATGAAACT	
    160214	    36	 100.0	    28	....................................	TGGGTCCACGTCTCACCATTCGGCACAA	
    160150	    36	 100.0	    28	....................................	AGGCCTTGATGGTCTGGAAGGATCGGCG	
    160086	    36	 100.0	    28	....................................	AATGCACCCTCATGGGTGCTAGATTGAT	
    160022	    36	 100.0	     0	....................................	|                           	
==========	======	======	======	====================================	============================	==================
        15	    36	  98.3	    28	ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC	                            	       

# Left flank :   AGGCGCTCTTGTTGACTACGTGGCCACCATCACGAACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC
# Right flank :  AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.20,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [1.05,4.5   Confidence: MEDIUM] 

# Array family : II-C [Matched known repeat from this family],   
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