Array 1 53704-55234 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXNC01000029.1 Simplicispira metamorpha strain NBRC 13960 Scaffold29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53704 28 100.0 32 ............................ ACTTCAAACCGTCGCTGCTCCTGCTGCGACCG 53764 28 100.0 33 ............................ ATATCTGGTGGCGCCGTGCGCTGCGCAAAAAAG 53825 28 100.0 32 ............................ TTGCGTGTGAACGGCACCCTGCGAACACCCGC 53885 28 100.0 32 ............................ TGCGCTGGATAGAAGGCCGGGGCCTGTTTGCC 53945 28 100.0 32 ............................ TGCGCAGGCAACACAGGCGGTTCAGGCCAGAT 54005 28 100.0 32 ............................ TTCCGCAGCGGCAGCTTGGATTTTTTCCTCAT 54065 28 100.0 32 ............................ TGACAGGCTTGGGAGCCAGACGAGAACCATTG 54125 28 96.4 32 A........................... ACTCGGCGATGGTTTCCATCAGCTTTTCCTCC 54185 28 100.0 32 ............................ AACGAACGTTGCGGACCACTTCGGCCTCAACG 54245 28 100.0 32 ............................ GCACCAGGAGCACCACCATGCACCTCACTGCC 54305 28 100.0 32 ............................ ACCGCAGCCGCACTGCGCGACAACGCTGCCAC 54365 28 100.0 32 ............................ ATCTACGCCCACGGCATCCCTGACCTCAAGAT 54425 28 100.0 33 ............................ CTGGCTGGTGAAGTTGGAACGGGGCGAGTGCAT 54486 28 100.0 32 ............................ TGCAGCAGGGCCACTTTTTTGGCGTTGTCGAT 54546 28 100.0 33 ............................ GATTGCAGCGATGCCACGCGGATCAACTGCTCC 54607 28 100.0 32 ............................ TGTCAGCGTGGCAGAGTCGGTGCCGTGGCCGG 54667 28 100.0 32 ............................ CTTTCCCACGCCTCTGCCCGTGCAGCCGCCCA 54727 28 100.0 32 ............................ TCGCTGGCATGCAAGATGGCATTGCGGTGCAT 54787 28 100.0 32 ............................ AGCATGCAGGCCATCTCGGCAGCCGCCACGGC 54847 28 100.0 32 ............................ GTTTCGCGCCCATTCCTTGCGATCCACGTCAA 54907 28 100.0 32 ............................ ATTGCGAGGGAGATTTGCCCCACGAGCTCGGC 54967 28 100.0 32 ............................ ACGAGGATGCGCCAATCCCGCCAGCCTGCCCA 55027 28 100.0 32 ............................ ATACTCGCAACAAGTGGGCCTTGACCTGCGTT 55087 28 100.0 32 ............................ AGTTCCGTGCCGTCTTCGGCTTCAACTTCGGT 55147 28 100.0 32 ............................ ATTTGCAAGCCTGTTTCTCTGTGTGAAAACTC 55207 28 92.9 0 ...........C.............C.. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.6 32 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GAAACCTGCGGCTGGAAACACCTGCGGAAAAGTGCGCTTTCGCTGTTAAGCAGGCTGTTAAGTGCTCTCCAGAAAAGTGCGGTTTCGTTGGTAACCGGCCTATTAACCATGCGCTGGTAACCATCCAGCAAATGCCTGATTCCTTGGATACCAGCGTGGATACCGCCACTGGAATGTAGAGTTTTGTCGGGGGAAATTCCCGCCACAAAGCAAAACCGACGCGGGGTCGGTCTGTGTTACGTCTTTTTGTGGTTTTGTTACGGACTCGGGAAACTACTTCCCCGCACCAAAGGCCAGAACCACCCCGGCCAGCAGCTTGGACAGCGCCAGCGTTTCCCGTTGCGTCAGGGTGGTCACGCTGGTGGCGCGGTTTGGTGCGATGTTTTCGACAGAATTTGCACCCTTTTCGAATTCGTCGCTCTGGCGGAAAGAAAAAGGGTAAGCCGCGCAACCATGCGCTTTCTCGTTGCGCGACAATCAATTGCCCGTTTCTGGTTCTA # Right flank : GGAGCGCCCCCCACGGGCGCTGCTCTGGTGGTGCCCCCTGCAACCGGGGGTTGCACTGTGGCGTGACGGTGGAGCACCAGGGCATGGCCTGGTTCAGCGTCGCCCACCCATAGGCACCTGCTCCACAGCCCCGGTTGCCTTGTTGAAGCGGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58392-59503 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXNC01000003.1 Simplicispira metamorpha strain NBRC 13960 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58392 28 100.0 32 ............................ AAGCACCGTTCCCTTATCAGTTCGCGCTCAAA 58452 28 100.0 33 ............................ ATCTCGGCAGCGGCGCCTTGCGTGACGCCAAAC 58513 28 100.0 33 ............................ CGGATGGAAACGAGGCCAGAATGATCCCGCAAG 58574 28 100.0 32 ............................ ACCAACCAGCCTTACATCCAGCCCGGAATTAA 58634 28 100.0 32 ............................ AATAAGCACTGACCCGACGTGGTACGAGTGCA 58694 28 100.0 32 ............................ TTCACTTCATTGTCTGCGTCACGCTGCTGGCC 58754 28 100.0 32 ............................ ATCGACGCGCAGCATGCGATCTACGAGACCGT 58814 28 100.0 33 ............................ TTAGATGAAAAATAGACGTGGCGGCCACCCTTC 58875 28 96.4 32 .....................G...... CTGGATGGCAGCCAGCGCCGTGGCCTTGAATT 58935 28 100.0 32 ............................ GAAAAGCTGGAAGCCGAACTGCCAGATGGCCC 58995 28 100.0 32 ............................ TGCTTGGCAAGGCAAAGGCCGTGCATGATGCC 59055 28 100.0 32 ............................ TGACGTGTACCCAGTCGGCTTTACCGCTGCGA 59115 28 100.0 33 ............................ ATTCGCCCGTGGAATCCCCCACCAGCGCCACAG 59176 28 96.4 32 ..........A................. ACGCCAGAAAGCGCCCCGGCCAGCCCCAGCGC 59236 28 100.0 32 ............................ TGCGAGGCCATCGTGCAGGCCTTGGACACACA 59296 28 100.0 32 ............................ AGTTGACGACAGGCCCGCAGGGGATTGCCCGA 59356 28 100.0 32 ............................ AATACACATGGGTTGTTCGGTTTGAAACCGAG 59416 28 96.4 32 ........................A... ACAAAACGGGCATGGGCGCACTGGCATGAAAA 59476 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGGCCACGTTGCAGCCCTGGGCCACCGGCACGTGGTTGGGCAGTTTGCGCGACCATGTCCGCAGCACCGCTCCGCTGCCGGTGCCTGCCGATGCGGCACACCGCACGCTGCGCCGCATTCAGGTCAAAAGCAGCCCCGAACGCCTGCGCCGCCGCCTGATGAAGCGCCACCAGCTCACCGACGAACAAGCCCGCCAGCGCATCCCCGACAGCGTGGGCCGCATGACCGATTTGCCCTATGTGCAACTGGCCAGCACCAGCACGGCGCAGCAATTCAAGCTCTTCCTGGCCTTGGGGCCAGCCCAGTCGCAACCGCAGGCGGGGGACTTCAACAGCTACGGCCTGAGCGCCACCGCCACCGTGCCGTGGTTTTGACCCTTTTTGAAGGCGCCCGCCGAGGTGGTTATGAATCAACAACTTACGGCGGCCTGAAATAAAAGGGTTTGGACGATGGAAATGCCTGAAACCCTTGCTGCGCAAGGGCTCCGGGCAGAATGGGCC # Right flank : AGAACTGGTACGACGCATTGGCGTGGCCCGCCAGTTCACTGCACCACAGGTAGCCCCAACCACCCCGTCATCAGTCACTTTTTGATAGCTGCTTGCGCATACCCTGCGCGGCTTACAGGCCAATTTGGCTTCAAATTCTCATGGCATGTGCGCTGGTGCTGGCACGGTATAGCGCTGGTCGGGGTGGTTTTCCTGCTCTGGCAGGGTGTAGGCCAGTACGCCGCTGGCCACCATGGGGCTGAGGTAGTTGCGCACCAGTTTCTTGTGGTCTTGCTTGCCCAGGACGAGGGCAATCTCGCGCGAGCTCAGAGCGCGCCAGGCGCACAGGTCGCGCAGCAGGTCGTGCAGGGCTTCGCGGCGGGGTTTGGTGCCGGGCGCGGGGATACGCGCCAGGATGGACTCAGGAATAGACCCCAGCATCTGGTGCCCATTTTCAATAGGCTGGAGCCCATCAGGGCCAATGTGGTGCCCATATTCGCTTGACTGGTGCCCTTTTAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54297-54864 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXNC01000030.1 Simplicispira metamorpha strain NBRC 13960 Scaffold30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54297 28 100.0 32 ............................ TGTGGAGAATTGAGCCGTCTAAGCTGCGGGTC 54357 28 100.0 32 ............................ GTGAAAAAAGACCCCCCGGTTTCGAGCGGCGC 54417 28 100.0 32 ............................ CTGCGCGGTCGCATGAAGCGCATTCCCGGGGT 54477 28 100.0 32 ............................ TTGCGCGCTGCGGCAATCATCTTCACGATTTC 54537 28 100.0 32 ............................ GTGAGAAGGCCACAGGGTTGGGGCTGGAGGGA 54597 28 100.0 32 ............................ ACCACCACCTCTTGCAAGCTGGGCGGCTCGGG 54657 28 100.0 32 ............................ TGCCGCCCGGCTCAGTGCGGCCTGGTATTTTT 54717 28 100.0 32 ............................ TTCCGCAGATTCATCTACTGAGCCATTAAGTC 54777 28 100.0 32 ............................ AAAGAAAAGCTGCCCTATTTCCTGCGCGTTGA 54837 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : TTTGACAGGTTCCCGTGGAAACCCCCTTCCTGTAAATCTGCGGCTGGAAACTGAAGTTTTATGAAGTGGCTGTGGAAACTGAAGTTCCAGCAGTGCGTGGTGCAGTGTCAAGGCATCCTGAATGCCTGCATTTGCCAGCAAACGTCAACTTTTGCCAACAGGCGAGGGGCCGTTTTCGTACCGCTCTGGAACCCCCGTCACAAAGCAAAAACCCGGCGCAGTGGCCGGGCTGGTGGTGGGGTGTGCCTCGTGGCTCAAAACTGAGCCGTGCGCCTACTTTCCCGCACCAAAGGCCAGAACCACCCCGGCCAACAGCTTGGACAGCGCCAGCGTTTCCCGTGGCGTCAGGGTGGTCACGCTGGTGGCGCGGTTTGGTGCGATGTTTTCGGCAGAATTTGCACCCTTCTCGAATTCGTCGCTCTGGCGCAAAGAAAAAGGGTAAGCCGCGCAACCATGCGCTTTCTCGTTGCGCGACAATCAATTGCCCGTTTCTGGTTCTA # Right flank : GGAGCGCCCCACCACGGGCGCTGCTCTGGTGGTGCCCCCTGCAACCCGGGGTTGCACTGTGGCGTGGCGGTGGAGCGCCAGGGCATGGCCTGGTTCAGCGTCGCCCACCCATAGGCACCTGCTCCACAGCCCCGGTTGCCTTGTTGAAGCGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1410-781 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXNC01000082.1 Simplicispira metamorpha strain NBRC 13960 Scaffold82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1409 28 100.0 32 ............................ ATTCTCAAGAAGCGCCCGCAGGTCGCCGCCAT 1349 28 100.0 32 ............................ ATGCGGGTGTCGATTGGGCTGTGCGTCACTTC 1289 28 100.0 32 ............................ GTGAACCGCTATCCCCGCAAAAGGATAGACGG 1229 28 100.0 32 ............................ AACACCAAACTGTCGCGCTTGCCAAACAGGTA 1169 28 100.0 33 ............................ TTTGCCGGTTGGTGGAAGTCCAAGCTGTCGTGC 1108 28 100.0 32 ............................ AAAAAGCTAGGCTCAACGTCCAAGCAGGCGAT 1048 28 100.0 32 ............................ ATTGTGGCTCCTGTTTCTGGGATGCTTGCTAC 988 28 100.0 32 ............................ AGACAGATAGCCTTGCGCTATCGCAGGCGTTC 928 28 100.0 32 ............................ TTGACGAGCGGTTTGCCTTGCAAGACGCCACG 868 28 100.0 32 ............................ ATGCGGGTGTCGATTGGCGAATGCGTCACTTC 808 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : CATGCGCTTTCTCGTTGCGCGACAATCAATTGCCCGTTTCTGGTTCT # Right flank : GGAGCGCCCCCACGGGCGCCGCTCTGTTGGTGGCCCCTGCAACCGGGGGTTGCAGTGCGGCGCAGGCGCTGGCCACGATCTCGGGCAGCCGGAAGAACGCGCGCATCTTGGCGTTGTCGCGCGTGATGCCTGCGCGGCTGCTGATGGCCTTGACCGTGCCCAAGGGGATGTTCAGGGCCTGGGCCACGGCGCGGGCCGATTGCGTGCGGCGCAGCGCCAGCACCTGGGCGCGCAGCGGCGGTGTGGTGGTGGTCATGCTGGGCACCTCACCAGTCCAGCGGTGCGCCGTCATCGAGGCCGCTTCGATCTCGCGGCGCCATCGCCCGCCACGCTTCATCCCTGGGCCTGCCATGCGCTGGCGCTGGCGCTGGCGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGGGCTGGTGCTGGGGCTGGTGCTGGTGCTGGGGCTGTCGCGTTTTGTCGCACGGTGTCGCGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //