Array 1 198236-197235 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VTIG01000003.1 Listeria monocytogenes strain FSL L7-0640 NODE_3_length_501155_cov_22.578421, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    198235	    29	  93.1	    35	..........T...T..............	TCAAATAAGGATTTAAAAAAAGTATTTTTGTTTAA  	
    198171	    29	  93.1	    36	..........T...T..............	TCTGATACTTTACCTTTGTCCTCTAATGATTGTATT 	
    198106	    29	  93.1	    37	..........T...T..............	GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC	
    198040	    29	  96.6	    36	..............T..............	TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 	
    197975	    29	 100.0	    37	.............................	TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA	
    197909	    29	  93.1	    36	..............T...A..........	AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 	
    197844	    29	  93.1	    36	..............T...A..........	TTTAACGTTGGCCCAACATTTTTATCTGAGAAGGGG 	
    197779	    29	  93.1	    35	..............T...A..........	TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC  	
    197715	    29	  93.1	    36	A..............C.............	GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 	
    197650	    29	  93.1	    35	..........A...T..............	ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT  	
    197586	    29	  93.1	    36	.........G....T..............	AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 	
    197521	    29	 100.0	    34	.............................	GTGTACTCTAATGCCAAATTTAATTCCTCCTATT   	
    197458	    29	 100.0	    36	.............................	AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 	
    197393	    29	  96.6	    36	..............T..............	AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 	
    197328	    29	 100.0	    36	.............................	GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 	
    197263	    29	  75.9	     0	T.....A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        16	    29	  94.2	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  CTCCTCCATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA

# Questionable array : NO	 Score: 5.34
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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