Array 1 34530-38514 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEMD02000018.1 Xanthomonas vasicola strain R5P scf_27138_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 34530 31 100.0 34 ............................... ATAGGACTCAAGCCACTCACGCAAGTGTGCCCAG 34595 31 100.0 34 ............................... CTTTTCGACCTTGCCGACTTGGAGATGTGGGATA 34660 31 100.0 34 ............................... TTCAAGCACTTTATCCAGACCTGCTGCATCCTGC 34725 31 100.0 34 ............................... CTCTCTTCCAGGAAGGGCAGCGCCATTCCGCCAC 34790 31 100.0 35 ............................... TATTTCGCTGCTCTGTGCAAGGATCGAATGGACTA 34856 31 100.0 34 ............................... TGGTTCCCTGGGGGATAAGCAACCATACGGCGTT 34921 31 100.0 34 ............................... GCGGTCGCTTCTACAGTGGCGTGGCGATACTGAG 34986 31 100.0 34 ............................... TGCCAGGGCGCGCACACTCTTCCTGTCTAGACGC 35051 31 100.0 35 ............................... CACCACCAATCGACTACACACGCCGACCGGTGCAA 35117 31 100.0 36 ............................... AAGCATGGCGATGTGGTTCGCGACTTCCGCGTGCGG 35184 31 100.0 37 ............................... AAGAACAAAACTGCTGCTCTGGCCGCAGTCGGCTCGA 35252 31 100.0 35 ............................... TGGTTTAAGGAATTCGGACGTAATCGCATAGAAGG 35318 31 100.0 36 ............................... AAGAACAAAACTGCTGCTCTGGCCGCAGTCGGCTCG 35385 31 100.0 34 ............................... ATTGACCCGCCATAGAGTGCAGCCACATCCTCGA 35450 31 100.0 35 ............................... CTGAACCAGTCCTCCGGGATACCTGTGATGCTCTT 35516 31 100.0 35 ............................... ATATCAACGGTGTACGTGATGATAATCGCCTGTGC 35582 31 100.0 34 ............................... ACGGTATCTGGGTATACCGAAAAATAAGCTGCGA 35647 31 100.0 35 ............................... TTCACCTAGGCTCCTACCCCACCGCTGACCTGGCC 35713 31 100.0 35 ............................... GCTCCTCCACAGCCTTAGTTGAGTCATGGCATAGC 35779 31 100.0 34 ............................... CAGTTCTACGCAGAACACGAAACAATGACGACAT 35844 31 100.0 35 ............................... CTTTAGCAGGCGTTCACCACTCTCTTGATCATATG 35910 31 100.0 33 ............................... CTGGTGTGTCTGTCTACCTTGGTAAGAGTTGGC 35974 31 100.0 36 ............................... CTTACTCAGCTGCATGGCTAGTGCACTTCGCTTATT 36041 31 100.0 35 ............................... AACCAACGCAAGTCTTCCGGGGCGTCTGGATCTGC 36107 31 100.0 36 ............................... CTGAAGCCCTGCCAGGTTACGTACCTTCCGAAGGGA 36174 31 100.0 35 ............................... CAGTCCTGAATAATGTCCTCATGCCCAATGAACTG 36240 31 100.0 37 ............................... CCTTGCGTTCGCCTGTCTTTGGGTCTCCCGTCCAGTG 36308 31 100.0 35 ............................... AGATTTTGGCGGTGCATCTGTTGTACTCCCTCTGC 36374 31 100.0 34 ............................... TGGGCATTGGACAACCATCAGCCCCTATGCAAGC 36439 31 100.0 35 ............................... CCACTGTGGCAGGGCCTTGACATAACCGGGGAAGC 36505 31 100.0 36 ............................... AGTACAGGTCACTGCATAGTGCCTACTGCAGTACGG 36572 31 100.0 35 ............................... CAATATGGAGAGTTCCTGATGGACTACCTAGTTGA 36638 31 100.0 34 ............................... TCGCCAGAGAGCCTTACCAGCGAACTTGCCGTGG 36703 31 100.0 35 ............................... AAGGTAAGCACAATGTGGTTGAGCAAGATCTGTCC 36769 31 100.0 34 ............................... TTAGCAAGCATGCCAACGTAGAGGTGGGCCTGAA 36834 31 100.0 34 ............................... TTAGCACCACCAGCAAAGCGGGCTAGCTGATACT 36899 31 100.0 36 ............................... AGGCACTGCACTGTCCCAGCCATTGGGGCCCTTTGA 36966 31 100.0 35 ............................... TGGCGGATTAGCTCCCCCTTAGCTGTATCCACGTA 37032 31 100.0 32 ............................... ACAAAATAAGGAGGCCCTATGGCCGAGCAAAA 37095 31 100.0 35 ............................... TTTGTCGGCTTTTTCAGCAAGGGCAAGCAGGAGAC 37161 31 100.0 34 ............................... GAGCTATGCGTGTTCGAACCAGTGCCAGTACACA 37226 31 100.0 36 ............................... AGCAATGTGGATTCGCAGGCTGGCGGCTCGTTACAG 37293 31 100.0 34 ............................... TGGGAGACTGTCAGACAATAAGCTGGTGCTGACG 37358 31 100.0 35 ............................... TGCAGGATGCACAGAACCACCAAGCATGGATGCAG 37424 31 100.0 35 ............................... CTAAGTGATAGCGAAGAATGCAGGCGGCTGACCTA 37490 31 100.0 37 ............................... GTGTACACATCTGCCGCCCCTAGGTCCGCAGAGGCAA 37558 31 100.0 35 ............................... AAGACTTGGTACTTTGACGAGAGTGCAGAGGGGTG 37624 31 100.0 35 ............................... ACTCTTTTGTACCAGCAGCGCATCATTCTGCGCCA 37690 31 100.0 34 ............................... CTGTGCTGCATGGCGCACGCGAGATTGCAGAGTT 37755 31 100.0 35 ............................... TTTGTCAAACATGGTAGCGGCCTCCGTTGGTGTAG 37821 31 100.0 33 ............................... ACCTTTGCAACCCTTACCAGCATACAGGCCGAT 37885 31 100.0 35 ............................... AGGCGCATCTCGAAGATCTTCACAGTTAATTTCCT 37951 31 100.0 36 ............................... ATCCCCATCCTCGTTTTGTGTGGCCGGTGCGGGCCG 38018 31 96.8 38 .....................C......... GTCTCGCTGGCGACGTTCTGGCTGCTGCTGCCCACCGG 38087 31 100.0 35 ............................... TCCTCCGGAGTCATGGTTGCATCCCCGGCTTGGCG 38153 31 100.0 35 ............................... GTTTCCAAGGTCGCAGCCAACGTCACCCGCATCAT 38219 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 38287 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 38353 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 38419 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 38484 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ====================================== ================== 61 31 99.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //