Array 1 12613-13247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEL010000004.1 Clostridium botulinum strain DFSPT001 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 12613 28 96.4 37 ..............T............. ATTGGTTGTAAATACCTAATTTATTCCCAGAAGATAC 12678 28 100.0 38 ............................ GCATTAAATAAAACTATAAAAGAAGCAACAAAAATAAA 12744 28 100.0 37 ............................ GCTTTGATGAAAAGCAACTATACAAATGTAAACATAC 12809 28 100.0 40 ............................ GCGTATTTAATTAAATTAATTACCTATAAATGGATAATTC 12877 28 96.4 39 ..............T............. ACGTCTCTCCCAACAAAAGCACATAGCTTTAGTTAAGTC 12944 28 96.4 36 .....................G...... ATAGAATATTTAATATCCGAATATAAAGAAAACAAA 13008 28 85.7 118 ............A.T..A.....A.... GTAGTTTTCATACCATACATAAGCTTAAAACATTAAATATCTAATTATTTAATGAAACTCCTTCTCGTTCCCTCGAACGAGTAAGCGACTCACACCAAATCACAGATTTGGGTTCCCT 13154 28 89.3 38 GC.................C........ ACGTGAAAAATAATGTTGGATAATACAGCGAAAATAAG 13220 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 9 28 96.0 48 ATTTAAATACATCTCATGTTAATGTTCA # Left flank : CTGAAATAGAAGAACATCAAAAGAAATATTCAGAGGAAGTAAAAAATAAATATGAAAACACCTCTGCTTATAAGGAAAGTAATGAAAAAACTTCTAAATATACAAAAGAAGATTGGAATAATATAATGAAAGATTGGGATATTATTTATAAAAAACTAGCAAATCTTATGGACAAAAATCCAGATGATGAGGAAGTTCAAGAATATATTCACCAATTTAGGGAGCATATTTCAAAAAACTTTTATGATTGTACCCCTGAAATATTTAGGGGTCTTGGGGAACTTTATGTTAATGATGAAAGATTTACGAATAATATAGATAAATATACAGTTGGTCTTTCTAAATTTTTAAGGGAAGCTATTAATGTTTATTGTGACAATATAAAATAATAATTATATGCTATTTTAAATATTATCTAAAATAGCTAGTATTTATTACACAAAAATAAGGTGATTCAAAATAGATTTAATTTATTTTGAATCACCTTATTCTACATGCTG # Right flank : AATCATAGTAAAATAGCCATTTCTCAATTCTAAGAATAGCATATAGCCTTTAATTTTACAAGGTTTCAAAGAAATTTTTCCAACCGTTTGTCATTTTTTATAAAGACATAGATAAAGCTTATCTTAAGGCTTATATTTCAATACCTAGAATAGAATTTAAAATTAAATGTGGTTGGAAAATTCTTTTACTTATAATTAGATTAATTAGTTACTAAAATTAATTTTATTTTATTTTTAAAGGTATTCCACAGGTTACTAAATAAACCTCATCACTCAAAGAAGCTATAAATTTATTTATAATACCTTGAAAGTCTCTAAATATCCTACCTAATTTATAGGCTGGAACAATGCTATAACCTACTTCATTAGTAACTAATATTATGTTTTTATTTTCTTCTTTTACTGATATTATTAGATCATAAAACTCTTTTTTTATCCCCTCTAAAATTTCATCTAATTGTTCTTCTTTAATATTTTCATAATCTATTTTTTTATGAAAC # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.99, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCA # Alternate repeat : ATTTAAATACATCTTATGTTAATGTTCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 228737-228517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEL010000001.1 Clostridium botulinum strain DFSPT001 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 228736 29 100.0 34 ............................. CTAAATAGTCTGGAACAACAATATAATGAATTAA 228673 29 100.0 35 ............................. TTCCTTATTGATTCAAAGATGCTTCTTTGTTTCTG 228609 29 96.6 35 ....G........................ CAAACAAAAACATTTAAGGAATGTTTTCTAACAAA 228545 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 98.3 35 ATTTAAATACATCTCATGTTAATGTTCAA # Left flank : AGTTTCTATTTTATCTATAAATTCTTTACTTAATCCCCTAATATTAAAAATATACAACCTATCTTTTTTATAAAATTTATCTCTTTCTATAGGATAAAAACTATTAAACACATAATTTTTATACTGTTTCTTTGGATGTATTTTTTTTAAATCGTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATGTCTTTTTTTAACATTACTGTTGCAATCAGTTCCCAAAATTCCATTTATACACCTCTTTATACAAATTTATCTATATTATACCATACACCCTTTAGTTAATATAACTGATTATTCTACTTATATTTTAAAAATATTATTATTTTTATTAATAATAAGTTAATTACTCATCATATTCCATTCTAAAACTTCGCATAAAATAAAAGCCTTAGATTATTCTAAGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAATAC # Right flank : CCATAGTAAAATAGCCATTCCTTATTTTTAAGAATATCATACAACCATTAATTTCACAAGATTTTAAAGAAAGTTTTCCAAGTAGTTTTGCTTTTTTACAAATATAAAATAAAAACCTACCATAAGCCTTATATGTCAACGCTCAAAATAGGTTTTAAAATTTATTTTGGCTGGAAAAATTCAGTTAGTAGAACTCCTTCTCGCTTCCTCAAATGAGTAAGTACCTCACACTAAATCTCAGATTTATATTTACTACTTAAATACATCTAACTTTACAATATAATTGGATTGCCCAATAAAAAATCGCAAATTCAATCTCTTGAATAATGCGATTTTTTACGTTTATTATTATAGTAAAATAGTTCCCTTTGCCAAAATAGCTACCTCTCCAGACACTAGTATTTCTTTTTCAGAAATGCTCATAGAAACCTTAATTTTACTAGGTCTGCCGACAAATCTTCCTTGATTTATTATAATCTCATGACCTACATTAAAAATAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 284222-284646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEL010000001.1 Clostridium botulinum strain DFSPT001 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 284222 30 80.0 34 TA.A..T..AT................... CATACAGAAAGATTATTTATAGTATCTTCTATGT 284286 30 100.0 36 .............................. GTTGTAGTTTGCTCATAAACAGTTACCATTTGTCCA 284352 30 96.7 37 ...............G.............. TTGCTTTTAATGCCAAAGCCATAGCTTTGTTACTATC 284419 30 93.3 36 ........A.......G............. GCAGTTTTCCCAAAAGCAACAATATTAAGAAATGCA 284485 30 93.3 36 ........A......G.............. AGAACTCTACAACTAACAGTATATTTTCTACAATTC 284551 30 96.7 36 ................G............. AATTTATAACTTTGATACTCAACCATGTGCATAAAT 284617 30 80.0 0 ...............G.....CGC....GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 91.4 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ACGATGGAACAGGTTGGGTCGATTGTCTCCGTTGTCGTAAGATACTAAGAGCCTAGATAAAAGAAAAAAGATTATTTAAACAAAAAGAACCCCAATAAATAGAGTTCTTTTTTGTATGAGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAATACATGGATATTTTAATCAAAGCTTTTCTATTTACCTAAAATATGTTAGGTTAAAACAGTATTGGATATAGAAGAAATTAAATAAATTTGTAAATAAAAACTCTAGATTATTTCTAGAGTTTTTTATAATATAGGAAATTAAAAATAATAATTGGATATAATAGTAAATAAAAAGAAGAGCAATATTCTATCATTCTTCTTTTGACGTCAAAAATACGTCAAAAATTATATTCTATTTTTGACGTATTTTATCTATAATAAAATTTATTAGAATACTTATAAAGCTAGTAATTAAGCAGTTTTGTCTTATAAATTACTTTTATTTTTTATA # Right flank : CAGAGAACCCAAAGTTGCAATTTGGAGTGATTTGTTTACTTCTTGCAGGGGAGAAGTAGGAGCTTCATTAATTTAATTTTTCAAGGTATAATAAATTTATAAACCTATTTTAGACATTGAAATATAAGGATTAGAATAGGACTTTATTTTGTATTTACAAAAAAGCAAAATCACTTGGAAAACTTTCTGCAAAACCTTGCAAAATCAATGGGTGTATGATATTCTTTAAAATAAGGAATGGCTATTTTACTATGATTGAACAGTAACATAGGATGTATTTAAATAGTTGTAATTGCAATAACAGCATAGCTGTAGCTCGTTGAATAGTAACATGAGATGTATTTAAATGCGACAGTTCTGTTATATTGTTCTTCTGCAGCTTGATTGAACAATAACATGAGATCTATTTAAGTAGGGAGCCCAAATCTCTGATTTGACGTGAGTCGCTTACTCCTTCGAGAATGAAAGAAGGAGTTTCATTAATGAAGTATAGCTTATAT # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //