Array 1 474693-476366 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVU01000003.1 Salmonella enterica strain SEH-17 NODE_3_length_660883_cov_20.8665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 474693 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 474754 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 474815 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 474876 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 474937 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 474998 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 475059 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 475120 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 475181 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 475242 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 475303 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 475364 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 475425 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 475486 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 475547 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 475608 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 475669 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 475730 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 475791 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 475852 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 475913 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 475974 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 476035 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 476096 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 476157 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 476218 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 476279 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 476339 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 493036-494651 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVU01000003.1 Salmonella enterica strain SEH-17 NODE_3_length_660883_cov_20.8665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 493036 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 493097 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 493158 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 493219 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 493280 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 493341 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 493402 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 493463 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 493524 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 493585 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 493646 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 493707 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 493768 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 493829 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 493890 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 493951 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 494012 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 494073 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 494134 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 494195 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 494256 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 494317 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 494378 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 494439 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 494500 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 494561 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 494622 29 100.0 0 ............................. | A [494649] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //