Array 1 454333-455825 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHA01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F64H1 NODE_2_length_634625_cov_18.0681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454333 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454394 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454455 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454516 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454577 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454638 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454699 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454760 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454821 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454882 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454943 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455004 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455065 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455126 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455187 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455248 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455310 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455371 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455432 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455493 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455554 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455615 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455676 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455737 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455798 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471957-473921 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHA01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F64H1 NODE_2_length_634625_cov_18.0681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471957 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472018 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472079 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472140 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472201 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472262 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472323 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472385 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472446 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472507 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472568 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472629 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472690 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472751 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472812 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472873 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472934 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472995 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473056 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473117 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473178 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473240 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473343 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473404 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473465 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473526 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473587 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473648 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473709 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473770 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473831 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473892 29 96.6 0 A............................ | A [473918] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //