Array 1 1193649-1193436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH109153.1 Methylobacter tundripaludum SV96 Mettuscaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1193648 29 100.0 33 ............................. CACACGCTGAAATATAACCGGCCGACTAAAAAC 1193586 29 100.0 32 ............................. AATTCGCGGGTGATCGTCGTAGCTGTGGAATA 1193525 29 100.0 32 ............................. AAAAAGAAGATGCTAAGGCGCTTGGGGCGAAA 1193464 29 79.3 0 .......................ATGAAC | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.8 33 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : GTAACCGACTGGCAGCCATATCTTGCCAAGTGTGTGTTCCCCACACCCGTGGGGATGAACCGTGTCGGCAAAGTCCATGGGCTTCACTTTATATGTGTTCCCCACACCCGTGGGGATGAACCGGCTGATAACGATGCGAAAAACGCTTATTTAAAGTGTTCCCCACACCCGTGGGGATGAACCGCGGATAATGACGCAAAGAACGCTTATTTATGAAAGTGCCGCTATTTTTGCGAAAGCTTGTTTTGGGCATCCCAGCCCAAGCAAGCGGCAAAAATTACGCGGCAGCCAATGCCTCCGGCGGCCCCAGCCGTCCTGCTTCATTCGTTGGATACCCAGCAAGGGGTATCCAACATCATTCTCGCAATGACTCGACGCGATGTCGGAAAGCCTGCATTTTCACTACGCAAAAAGCGCTTCGTGAAAACACATGCGCTATCGCTTCTGCGGACTAAAAATCTTCGCTACGCGGTGCTCCGCTTCCAAGATTTTCAGCGAAG # Right flank : CAATTTCAGATTATTTTAGAGTGTGTCCTGTCAGCGCATCCACTTCAGTTACCAAGGCATGCCATGAATTTAGCAATGAGGGGATGGGTTCTTGCTGGATTAAAGCATCGCTTTTAAGCCTCATTTCTTTTTGAGGTTTTTGGATGCAGCGGATTAGCTGTATGGCTATTTTGTACTGTTTACGTTGAGAAAATGAAAAGCATCATCGCAATCTCTCCCGTCCCCCCAGTTATTTCTACAATATTTTTACTCGGGCTGTTTGTTCCCGGCATTCGCCACCAACAACCGGTTAACCTGTTCAAGATCATCTTGGCTAAGGCTGCTGGCCGCTTGTTTTAACTTGAGGCTGTTGATCAGGTAATCATAACGGGTGCGTGCAAAATCCCGTTTTGCCTTGTATAGATTCCTTTGTTCGTTCAGCACATCGACCATGGTTCGGGTGCCTGCGCCAAAGCCTGCTTCGGTCGCTTCCAAGGCGCTGGTCGCGGATGTCACCGTGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1195946-1193965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH109153.1 Methylobacter tundripaludum SV96 Mettuscaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1195945 29 100.0 32 ............................. GACCAAAAGCGATACTGCTTTACTGCCGTAGC 1195884 29 100.0 32 ............................. TATGAAAGCAAACAGACCCAACATAAACCCCT 1195823 29 100.0 32 ............................. CGCAATTCCGACGAGTCCATTATGCTCAAACC 1195762 29 100.0 32 ............................. CGGTGATGGTGCGCGTTCCAAAATCCATAAAT 1195701 29 100.0 32 ............................. CCAATATATGATCGTTTTGAATAGCGATGTAA 1195640 29 100.0 32 ............................. ATCAGCAATCAGCGTATCAATATCTGTTTTTA 1195579 29 100.0 32 ............................. TGGCGTGCACCTTCTTTAACAATTCAATCCTG 1195518 29 100.0 32 ............................. AATCCCGTTCCAACTATCCCCCGGCGGCACTG 1195457 29 100.0 32 ............................. ATTCAAATTTGCACATCGATTTATTTATGCAA 1195396 29 100.0 32 ............................. AAAACCGGCGATGACATTATCAAAATGGTTCA 1195335 29 100.0 32 ............................. CAATAGTTAAAATTTTTGGTAGAAATGATTAA 1195274 29 100.0 32 ............................. ACAAGGACAAGCCTTAAATACAACGACCATAT 1195213 29 100.0 32 ............................. CGCTTGTGCGCCTGCTCGACAATCTTTTTATC 1195152 29 100.0 32 ............................. GTCGCATTAAGACGAGCAAGTATCAAAAGGAC 1195091 29 100.0 32 ............................. GAGGGTGAGCTACTGAGTTATTGATGGCAGGC 1195030 29 100.0 32 ............................. TATTGGGTCGCCATCCTTGGCGGGGATAAATA 1194969 29 100.0 32 ............................. CTATCGCATCCAACGCTTCATAAGCCACAAAA 1194908 29 100.0 32 ............................. CAGGAAAAACGCGTTCCGTTGAGTCTTTATGC 1194847 29 100.0 32 ............................. CGTGATTCTGACGAGTCCATTATGCTCAAACC 1194786 29 100.0 32 ............................. ATCGCTCCGATTGTCATCGCGTTGGCGCTGTT 1194725 29 100.0 32 ............................. TTTAGTGTTACTAACAGGTTGCCGTTTGCTGA 1194664 29 100.0 32 ............................. CAGCCGACCCTTGTGCACCCATTCGCGTAAAG 1194603 29 100.0 32 ............................. AGTCCAGACTGAGGCTAATTGTACCGGGTATA 1194542 29 100.0 32 ............................. TAATAAAGTTGAGTCGTTGGGCGGTACATGGA 1194481 29 100.0 32 ............................. CAAAATAAGGCCGTTTTCAGGCTGTTTAAGCG 1194420 29 100.0 32 ............................. GCGACGGCGCATCGTTAGCAATGCACTTATAG 1194359 29 100.0 32 ............................. CTCAGCTAAATAGCATGTAAACACCAAGATAA 1194298 29 100.0 32 ............................. GCCGCAATAACCTCTTGCGGCTGTTCGCCTTG 1194237 29 100.0 32 ............................. CCGGACAGACCAATGACCCGGTATGGGAAAGG 1194176 29 100.0 32 ............................. TAACCGACTGGCAGCCATATCTTGCCAAGTGT 1194115 29 100.0 32 ............................. TGTCGGCAAAGTCCATGGGCTTCACTTTATAT 1194054 29 100.0 32 ............................. GCTGATAACGATGCGAAAAACGCTTATTTAAA 1193993 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 100.0 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AAAGAGCAAAAGATTGGGCTGAATAAGGTTGCCGAATGAGTGAGATAAAACTTCGCGAATATGAAAACTTTCATATTGTGTTATGGCTTTTGAAGGATACGTGTTGGTTGATGGAATGGAGGCTTGAAGGCATTTTCATGATCGTGCCGACGATTGCGGCGGCTTTTCACATTACCTGGCTGGGACGAAAAAACACCGCAAACCTGTTTCATAATTTGGCGGTCAGTAGCTGGATATGCGGTAATGCGGTTTGGATGATTGGGGAGTTCTTTTTCAACGATAGCTTTAGGTCGTTTGCTAAGGTATTTTTCAGCATCGGTGTGGTGTTTCTTGCAGTGTATTATTTTGGCGTGTTGCCGAAAGAAAAACGCGCCAGGCGATGAGAAATGTCATGCTGAACTACTTTGCTCTTTAACAAATTAATGACAAAAAGCGGCTGTTTTTTCGGTGGAAAAATTGGAGTGGTTATTTCGTTTTATTAACAACATGTTATGATTAGT # Right flank : CGGATAATGACGCAAAGAACGCTTATTTATGAAAGTGCCGCTATTTTTGCGAAAGCTTGTTTTGGGCATCCCAGCCCAAGCAAGCGGCAAAAATTACGCGGCAGCCAATGCCTCCGGCGGCCCCAGCCGTCCTGCTTCATTCGTTGGATACCCAGCAAGGGGTATCCAACATCATTCTCGCAATGACTCGACGCGATGTCGGAAAGCCTGCATTTTCACTACGCAAAAAGCGCTTCGTGAAAACACATGCGCTATCGCTTCTGCGGACTAAAAATCTTCGCTACGCGGTGCTCCGCTTCCAAGATTTTCAGCGAAGGTGTTCCCCACACCCGTGGGGATGAACCGCACACGCTGAAATATAACCGGCCGACTAAAAACGTGTTCCCCACACCCGTGGGGATGAACCGAATTCGCGGGTGATCGTCGTAGCTGTGGAATAGTGTTCCCCACACCCGTGGGGATGAACCGAAAAAGAAGATGCTAAGGCGCTTGGGGCGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 472481-472161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH109152.1 Methylobacter tundripaludum SV96 Mettuscaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 472480 36 100.0 34 .................................... CCATAACGGTCAAATGTTTCAATACCGTACTTTT 472410 36 100.0 35 .................................... TTTCCCGTTAATAGCCTGCCGTATGAGAGTTACCT 472339 36 100.0 36 .................................... TTGAGTGCGCGATCCTTTATAGACATGCGGACAATG 472267 36 94.4 34 ...............T.C.................. ATGTGCTAACCGATTGGCGTGAAACCGTCCTTGT 472197 36 80.6 0 ....T.................GT..AA..C...G. | T [472192] ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 95.0 35 GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : TCTGTTTCGATGTGCATGACGCCAAAAGGTTGCGCAAAGTCTCCAACGAGATGGAAAACTTCGGCGTCCGCGTACAGCGTAGCGTGTTCGAATGCCATCTTGAAAGCGGCCAGTTGCAGGAGCTTAAACGGCGGCTGGACAAGTTGATGAACCCGACGGAAGATCAGGTGCGTTATTACAACTTATGCGGCAAAGACAAGCTGCACATCGTTATCGATGGCAGCGGACGGGTAAGCGCAGACCCGGATTATAATCTGCTCTGAGGCATGAAAAGCGGTTTGCGGCGCGTCGCTGCAAAATCGGACGGTTTTTAGGGTTCGCTGTTAAATCAACAGCTTGCGAAATAATCGAGGAAAATCGCGCCGTATATTGATTGATAAAGGGAATTTTTGTTTTGTTCAGGTAAATTAGCGGTTTTCAGGAGAATTGATGGAAATCCCGCGCACCGCGCCGCAAACAGACCAAATTCCGCTTGCAAAGCAACAACCTGCAAGGGTACA # Right flank : GCAAAAAAAACGCCCGGTTAAGGGCGTTTTTTTCATTGCCAAACTTTAGAAGTTTTTCAAAATTCGGTGCTATTCATTTCACGGTCACCGTTTCAGGTTGATGACGATCCCCGCGCCATCTAACGATTTTCGCTTATCCACTTCCGGTTCTTGCGACATCAACACCTGACTATCCAAATATAAAGGCCGCGGCCTTTTGTTCTTTTCCGAAGCAAATATATTTAATGATTCTCCCTGAACGGCCTTGTTTTGTTCAATCGTCAGCCAGGCATTTTCAGAATCCTTAAATGGCATAGAAAGATCCAGCGGTTTTTGAAATTCAGCCTCTTCAGCAACCGCTTCCTGCTTATTTTTTGTTTTCTGTTTTGGCTTAACGAGGCTTTCTTTGCTCTTGGACTGCACTTTTTTTACTTCATTTGCTGAAGGAAGAGCATTATTAACGCCGGGCTTTTCAAACCCGGTCAGCAAAATAAATGAAGCCGTCACAAAACTCACTATAA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 477070-476747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH109152.1 Methylobacter tundripaludum SV96 Mettuscaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 477069 36 100.0 35 .................................... GCATTAACAACGAGCTCAATCTCTACAATCGTAGA 476998 36 100.0 37 .................................... GCCTTCATAGTTCTTCGCGTTTACATCCCCCACATAG 476925 36 100.0 35 .................................... TGAGGGCGGTTAAGAGTACCAGCCAGACTGTGATT 476854 36 100.0 35 .................................... AGTACTATTGGATGTCTATCTAAAAAGTTATCTTT 476783 36 88.9 0 .................C.A..........A....T | A [476761] ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.8 36 GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : AATAAAACATGATAGAAATCAACCTTGCCGTCTTGTACAACCAAACCGCCAAACTGTCGGCATTGCCGGACTACGAGCAACAAGCCAAAGCCTTGGCGGGCGACGGGCGGGATGTTGTGTTGACCGGGGCGGCTCCGGTTTGGCTGTATCTTAGAATCGCCCACGCCCTGCACGGCAAGGTAAAAAGCCTGATTTACCGTTCGCCTGTTACCGGCGATGTGGTCATTTTCGATCACAATCCTTATTAACGCTGGGATTTGGCGAATGCGAATAGCCGTTTGCGGCGCGTCAGGCGAAAGTTTTGTGATTTTTTGCGTTTGCTGTGAAATCAACAGCTTGCTAAAAAATCGAGATAAAGCGCGCCGTATGTTGATTTATAAAAGGAATTTTCGTTTTGTTCAGGTTTCCGGCCGTTTTTTAGGGTTGCCGCCGAGTTCTTTACTAGGTGCGCCGCAAACAGCCGAAATTTCGCTTGCAAAGCAACAGCCTGCAAAGGTACA # Right flank : ACGTTTGGGCGAATCTACTTTCGCCCAAACCACTTGCGTTTTAAGCACATCATTCCAGCCCAGAGCACGCCCTCATGCAAACACCCCAATTGTCCGATGCCTTGACCGATTTCAATCTCCATCAGGCCTGGAGCAAGGTGTATGAAAACCAGGGCTGCGCCGGTGTCGATTACCAAACATTGGCGGCGTTCGCAGACCGGCTGCACAAAAACCTCGAGACCTTGCGCGATGAAGTCAGCGATGAAACCTATCAACCCCAGCCGCTGCTGCGCATAGAACTGGAAAAGCCCACCGGCGGCACTCGCCTTCTGTCCATCCCAACGGTGCGCGACCGCATCCTGCAAACGGCGGTGACCCGCGTCATCGAACCTTTGTTCGAAGCCGAGTTTGAAGATTGCAGCTTTGCCTACCGCAAGGGCCGCAGCGTCGATCAGGCGCTAGGAGACTGTCGGATTTAGCAGTGCAAAAAGTGTTAAAATAACCCTATCGAAACACCAAAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 850549-847654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH109152.1 Methylobacter tundripaludum SV96 Mettuscaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 850548 29 100.0 32 ............................. CTACCATCGGCAGCGGCCAGCAGGCTGATGAA 850487 29 100.0 32 ............................. ACCGTTGCCACGTCCGGACGTGTGATGCTAGT 850426 29 100.0 32 ............................. GCTAATAAAAATATTCGAGGAGGCTGGGATGA 850365 29 100.0 32 ............................. CCAACATATAACCAGTACAATTCGCCTCAGTC 850304 29 100.0 32 ............................. TGGTGTTTTTCCATCCCATAAATCGAATTCGC 850243 29 100.0 32 ............................. CCTTAGGCATCGTAAACTCGTCATCGGACGGC 850182 29 100.0 32 ............................. CGCCTTGTTCCTCTTTTTGAGACTGGACTGAT 850121 29 100.0 32 ............................. AACAACCCAGTCCAATGGATCAGTCTGAAACT 850060 29 100.0 32 ............................. CGCAATTAATAACCAAGCAACCCCGTTGATCG 849999 29 100.0 32 ............................. ACAATATCAGTGATCAGCACAATAACAAATGC 849938 29 100.0 32 ............................. AACTGTTCTCGGACGACAAGCCAGATCCTGGG 849877 29 100.0 32 ............................. AACCTGTTGGCATTGGGGCCAATGGTGCTCGG 849816 29 100.0 32 ............................. CGCCTTGTTCCTCTTTTTGAGACTGGACTGAT 849755 29 100.0 32 ............................. CGCGGATGGCAATTATTACGCCGTTCCAGAGG 849694 29 100.0 32 ............................. CGCTTGTGCGCCTGCTCGACAATCTTTTTATC 849633 29 100.0 32 ............................. TTGACGAATTTACACAGCGTATTTTTGATAAA 849572 29 100.0 32 ............................. CACCCCTTCAACTTCGCAAATCCTAGCCAGAG 849511 29 100.0 32 ............................. CATTGTTGAGATTGATCCAGGATGCCCGGTAT 849450 29 100.0 32 ............................. ATTGAGATAGCTTTTATGATCGCCTTGGCGTG 849389 29 100.0 32 ............................. CAAAAAAATACAATCCCATTGGCAACCAATCC 849328 29 100.0 32 ............................. CCCCTAATGCTCCTTGTAGTCGCTGCAATAAA 849267 29 100.0 32 ............................. GTTTTAGGCGTTGCTCGTTTGGAGTGTAGTGC 849206 29 100.0 32 ............................. CCGGTCGGCTACTCATACGAATGTCTTAATAC 849145 29 100.0 32 ............................. CCACGGCCCAAACGGCGACAACCAACCACGAA 849084 29 100.0 32 ............................. CTCGTCACCGGTTTTGTTTCTCATGTTTTTAT 849023 29 100.0 32 ............................. ATGATCTAAAACCTGATCTTGATAAAGCGACG 848962 29 100.0 32 ............................. CCGGTTGTTGAAGGCGAATTAATGGAGAATGT 848901 29 100.0 32 ............................. CATCAGCGTGCCGTCAGGAAGCTCAGACCACT 848840 29 100.0 32 ............................. TTCTAAATCTTCTTTCAAATACCGCTTCCCAT 848779 29 100.0 32 ............................. TTCCGTGGCATTGGCAACATCGACGGCCATAG 848718 29 100.0 32 ............................. GGAAACCCGCTGCGAGGCAATCCACTCGTCCA 848657 29 100.0 32 ............................. GCACATATCACATTCGTCTTCAGTTTCGCAGT 848596 29 100.0 32 ............................. CGCTTCCAATCGTTCCCGTGGCGTTCCTTTAT 848535 29 100.0 32 ............................. GATTATCCGCAGTTACCCTACCATCGCAATAA 848474 29 100.0 32 ............................. ACATTCTTCCCGTTCTGCCAGTGAAAAAAATC 848413 29 100.0 32 ............................. GTTTTTGCCCTTCGTCGCCCTATGCCGGAACT 848352 29 100.0 32 ............................. TTCAGTGGTGGTTCAATCGTTCGGGCTTCGTT 848291 29 100.0 32 ............................. TTAACACTATCCATTATTTAACGGTGAATCCA 848230 29 100.0 32 ............................. CGCCTGTACTCATCAATAATCCGAGAACACGC 848169 29 100.0 32 ............................. ACCCGGCAACGCATAGCCTGCTAGGCGCCGAG 848108 29 100.0 32 ............................. GACATGTCTGGTCATGTGCGGATACCTATTGT 848047 29 100.0 32 ............................. CGATACTCCACTTGAAATGAGTAGCCGTTTTT 847986 29 100.0 32 ............................. CCTGCGCCGAGCAAAAGGTCATCGGGTGAGCA 847925 29 100.0 32 ............................. GTATCTCTTAAATGCTCGACTGTTTCAGCAGC 847864 29 100.0 32 ............................. TTCATGGTGCTTCGCTTTCCACTCCTTCTCGA 847803 29 100.0 32 ............................. GTCATGCTGATACTGATACCATTTGGTGCATG 847742 29 100.0 32 ............................. CGATTGACGCCATTGCAGCCAACCGGATGGAA 847681 28 72.4 0 A................ATA-.....TAA | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AAAATCATTCCCACCATAGAAGAAGTGCTGGCCGCCGGTGAACTTGAACTGCCCCAACCTGCTGAAGAGAATATCGCTCCGGCCATTCCTAATCCTGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCACCGATTAAGAGGGCGATTAGCCGTTTGGCTGATCGAGATTCGGGCGGGCGTTTATGTCGGCGATTTATCGGCTAAAGTCAGGGAGATGATCTGGGCGCAAATTGTAGACGGTATTGAAGAAGGCAATGCAATTATGACCTGGAGCACCAATACCGAATCGGGTTTTGATTTTGTTACTTTGGGTAAAAACCGTCGTCTGCCGGTCGAGTTTGACGGACTCAAACTGGTTTCTTTTTATCCGCTTGAAGACCAAAAGGATAATGATGCTCTTTAACAATTTAATGGTAAAAAACGGCTGTTTTTTCGGTGGAAAAATCGGAGTGGTTATTTCGGTTGATTAACAATATGTTATGATCAGT # Right flank : CCCCCATTTCATCCGCATTGATCAGTCGAATCCGTATCCTCCGCGTTCTATTTTTCATTGCCGAATAGTTGCGATAGTGCCGCGCGAAATCAATTTTTTCATCATCATACGGTCAATCTGATCGCTACTTTGAGCCGTTTAAAGACGGTAAGGGAAATTTGGTTGTACCTTGTCCGCTTCATATCTTACAATCCCACCGGGTGTGCAGTAAGGTTACTGGGCGTGTAGGTTCCCCACACATTAATAATATTAAGAAATATTTTGGAGGATAGTATGTTTAAAATTCGTTCGCTGGTTACAGCGTTGGCGTTGGCAAGTTCGGTTTCGGTGGCTTCGGCTTGGGAAACTTTGCCCACAGAAGCACCGGCACCGGCCGATAATGCTACAACGCCTGCTAAGGTTGAGTTGGGGCAAATGCTCTATCACGACCCGCGCCTGTCTTCTACAGGTACGGTTTCCTGCTCTTCCTGCCATAACACCATGCTGGGCGGTGAAGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //