Array 1 89-837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVET01000127.1 Pseudomonas aeruginosa strain 499_PAER 2137_1425_21611_1400+,...,705+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 149 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 209 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 269 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 329 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 389 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 450 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 510 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 570 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 630 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 690 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 750 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 810 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38316-39482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVET01000117.1 Pseudomonas aeruginosa strain 499_PAER 2126_48944_539541_1270+,...,630+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38316 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 38376 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 38436 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 38496 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 38557 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 38617 28 100.0 32 ............................ ACTGTTCGAGTCGCGAATGACTCGGTGAACTA 38677 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 38737 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 38797 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 38857 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 38917 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 38977 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 39037 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 39097 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 39157 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 39217 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 39277 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 39337 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 39396 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 39455 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48907-48339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVET01000117.1 Pseudomonas aeruginosa strain 499_PAER 2126_48944_539541_1270+,...,630+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48906 28 100.0 32 ............................ AGGTCGAGGTGGGCTCGGCGGCGATGATCGAT 48846 28 100.0 32 ............................ GGTACGTGGTTTCGACCAACAGCACTGCCCAA 48786 28 100.0 32 ............................ TAAAGGAGATTGCCATGCTGATCAAACTTCCC 48726 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 48666 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 48606 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 48546 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 48486 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 48426 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 48366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //