Array 1 390198-393405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050976.1 Streptomyces sp. RPA4-5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 390198 30 76.7 118 ..G..T.......AG..........G.G.C CGCGGACCGGTCAGCGCCTGCGAGAGGCCGTGTGGCCGGAAGATTCAGACGTGTACATGACCGGCGTTCCTTGAATCACGAATCGGCAAAGCGCTCCTAACACCGCAGGTCGCGAAGG 390346 30 96.7 31 .............................C CGGACCGGGGTCGTGTGTCCCCAACGGTGCT 390407 30 96.7 31 .............................C CGGACCGGGGTCGTGTGTCCCCAACGGTGCT 390468 30 96.7 31 .............................T CACGCCCTGACGGGAAATGCCAGCCTCAATC 390529 30 96.7 31 .............................C CCCGCCGCAAGCGCACCACGATCCTCGGAGC 390590 30 96.7 31 .............................T CGTCGCCATCGCTGCTGCCCTCCAGGAATCG 390651 30 96.7 31 .............................A CGTCCGGGTCGTAGGCGCTGCGCACGATCCG 390712 30 96.7 31 .............................T TCGACATCGAGTTGACTCTGAAGAGGGGCAC 390773 30 96.7 31 .............................T TGTCGTAGCGGGTGACCCGCGTGACGAGTAC 390834 30 100.0 31 .............................. AGCACTTCGTCCAGGCGGCCAAGGGCACCGG 390895 30 96.7 31 ............................C. CCCCAAGCCCCCAGCGCGGGGCGGCCACCTC 390956 30 96.7 31 .............................T CCCGTCATGCCCTGTACGTGCCGAGCGTCCT 391017 30 100.0 31 .............................. TCACTTTCGGAGAGGGTGACCTCACCGACTT 391078 30 96.7 31 .............................A TCGACGCCGCAGTCGCTGCCGTGCTGGCGTG 391139 30 100.0 31 .............................. CAGCCGACAAGGCCCTCCACGACAACAGCGA 391200 30 100.0 31 .............................. TCACTTTCGGAGAGGGTGACCTCACCGACTT 391261 30 96.7 31 .............................A TCGACGCCGCAGTCGCTGCCGTGCTGGCGTG 391322 30 96.7 31 ............................A. TCGTGCGGCGCCGCCGGCTGGCCGTCGGGAG 391383 30 93.3 30 ............A................A TGGCATCGACACTCTCAGCGACGGTTTCAA 391444 30 100.0 31 .............................. GCCGACTGTGGAGCACCTTCAGTTTCCAGGG 391505 30 96.7 31 .............................C GGAGGAGGGCGCGGGGACCGAGGGTGGTGTA 391566 30 100.0 31 .............................. TGTGGCCGGGACCGTAGGTGTGGGGCTTGGC 391627 30 93.3 31 .........................C...A TCCGGCACGGGTGGTCCGAGAAGATCACCCG 391688 30 73.3 31 ..GG.....T.AA..AT............A ACAAGGCGTCGATCGCCGTGGCCCGGACGAC 391749 30 86.7 30 ..GG........A............T.... GTGATGAGTGTGAAGGGTTGCCGCATCGCC 391810 30 83.3 52 ..GGA......C.................C GCCGGGTCTCGCGGTTAGTGGTCACCGCGCCGGTACCCTCTGCAATGATCTT 391892 30 83.3 110 .........A...AG.........GG.... CCAGTGCCTGCGAGAGGCCGTGCGGCCCCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACTAATTGGCAAAGCGCTCCTAACACCGCAGGTCGCGAAGG TAAGCGGTC [391913] 392041 30 86.7 31 .A...........AG..............A TGAGCTGTTCACCCTCGCGGGGCGTGAGCCG 392102 30 86.7 31 .A...........AG..............C CGGACCCCGGCCAGGGCGCCCGGCCGGAATC 392163 30 90.0 31 .A...........AG............... TGACATCCAAGGCCGCGTCGTCCTCGACATC 392224 30 86.7 31 .A...........AG..............C CGGCATCCCCGGGCTGGTCCACGCCGAAGCA 392285 30 86.7 31 .A...........AG..............T CGGGGATCTGCTGGACGCGGATGGCGTCGAT 392346 30 80.0 31 .G.......A.....A........GG...A GTGGTGGGCCACGCATCGTCGGCTCACATCG 392407 30 96.7 31 ..G........................... CCCCGGCCGGAGCTGCGAACTCCACATGGCC 392468 30 90.0 30 ..GA.........................C ACTAACTCGCTACCCCCAGGAGACTCCGAA 392528 30 80.0 31 ..GG.................A..GG...T CGCCGCACGCATCCGGCGGCCGGATGTTCTC 392589 30 76.7 31 ..G..........AG......A..GG...T CTCGATACAGCATCGGTATCCCCTCGTCGAG 392650 30 80.0 31 ..G......T...AG..........G...C CACGATCGACGGCACGCACCGCGTACGTCTC 392711 30 83.3 31 .C...........CG.........G....C GAATATGCCTGCGAGACGGGTGCACCTCCGT 392772 30 80.0 31 ..G..........AG.........GG...A CCTGCACGATGTCCTGGTGCCGGCTGGGGCC 392833 30 83.3 30 ..G..........AG..........G...A AGTCCTTCGGCAGCATGCCGAAATCGATGT 392893 30 90.0 31 ..G..........AG............... CGGACGGTCTGTGGGCCGCCATGCGGCTGGG 392954 30 83.3 31 ..G..........AG..........G...A TTCCGCCGGGCAGGGTGTAGTGCGTGTCGTC 393015 30 83.3 31 ..G..........AG.........GG.... TCGAGGTCCACGAGGCAAACCATCCCGTCGC 393076 30 80.0 31 .CG..........AG.........G....T TGTCGGTCAGACCGTGGATGCCGCAGGGCTC 393137 30 83.3 31 ..G..........AG.........GG.... AGCTCCACGCCCCATGGACCAGTCCGCTCGA 393198 30 86.7 32 ..G..........AG.........G..... AAAGCGCCCCTGCGGTCCTCGTGGGAAGCATT 393260 30 83.3 22 ..G..........AG..........G...C CGCAGGCGTTGCAGGGGCTCGC Deletion [393312] 393312 30 76.7 31 AA..G........AG..........G...C TGTGCGGGATCGGTGAAGGCGGCCAGCAGGG G,GC [393317,393319] 393376 30 80.0 0 ..G....T....GAG..........G.... | ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 50 30 89.5 35 GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Left flank : CAAGAGTGCCGAGGTGAGAGGCGACCAGGGCCTGCGCCACGGACACAAGGCTGGTGACGCCGGGTGCCGCCTCCGGGGTGGCGTCCGGAGCGAGAGCGGCGAGTTCGGCGGGGTCGGCATCACAACGCCAACTCAGCGGCACGCACGGCGACATCATCACGTTGAACACAGAGCAGAACTCCAACTATGGCGAGTACCCGGAAGCCTCGAATGCGTGAACGATAAACTGGGCTGCATTTGCAGGAATTTGACGCACCATCCGATCAGCGCGGGGCATCAACATAGGGTTCGGCGAATCACCCGTGCAAGCGCTCTCGGCAACTGTCAGTAGGGCTGTATATGGTGGCAGCGGAGGCACTCCGCCCATGCGAACGGATCCCGTTAGACGACCCGAACACGCAAGCCGCGACGTCGTCGATCCTGCTGGCGCTGACCTGCTCATACGGCATCCGAAGATTGAGAATTGAATGGCAAAAAGCCTCAAACATCGGCGGTGGTAG # Right flank : GATTTCCGGGCGCGCGGCGTGCTGATTCCGGAGTGCTCTCCGCGTGAGCGGAAACGGGCCGCCGCGGGATGTCCGTCCGCCGAGCCGCATCTGGCGCTCTTTAGGCTGACGGAGTGAGTCGTCCCGGCCAGGGCAGTTGCTGTGAGGGGCCGTGTGGCTCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATTGGCAAAACGCCCCTAGCGGCGCAGGTCGCGAAGGGTGCTCTCCGCGCAGGCGGAGGTGGGCCGGCCGGCCGCAGCAGCAGCCGCACGCCGTTCGAGTGCTCTCCGCGCAGGCGGAGGTGGGCCGTACGGAAAGGATGTGTGTGCCCGAGAGGACGGGTGCTCTCCGCGCAGGCGGAGGTGGGCCGGCGAGGCCGAAGAACGCGAATGCACGGCTTGAGTGCTCTCCGCGCAGGCGGAGGTGGGCCGGTGATGGCGAGGTCGGGGTCTTCGACGAGAACGTGCTCTCCGCGCAG # Questionable array : NO Score: 4.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-82] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 398851-400038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050976.1 Streptomyces sp. RPA4-5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 398851 29 100.0 32 ............................. TCGCGAGTTGAACGAGTTGCGACTAATGATCT 398912 29 100.0 32 ............................. GTGCCCTATCTCCGAATCATGGCGACGGAGGA 398973 29 100.0 32 ............................. TCGTCATCGTCGAGGACGAGGTCCTGGTACGC 399034 29 100.0 32 ............................. CGGGTGGCCGGCAAATTGGTGTTTGCGCCACC 399095 29 100.0 32 ............................. CCCAGCAGGCCATCGACGAGGCGAAGGAGAAC 399156 29 100.0 32 ............................. GCGGCTGCGTCTGCCCTTGCGCGACCCGGGCC 399217 29 100.0 32 ............................. ACAGGACGTCCTGCCAGGTTCGGCCAGCCGAT 399278 29 100.0 32 ............................. TCCGGGTCGTACGGCTCGACCCAGCCCTCGTC 399339 29 100.0 32 ............................. TCAGCGTCACCCTGGGACCGGGATCCGGTGCC 399400 29 96.6 32 ............................C CGTCAGCTGGCCCTTTCCCGCCCCGTGTCTGC 399461 29 100.0 32 ............................. GACTTGTTGGCGTCGTAGCCGTACTCGATCGG 399522 29 100.0 32 ............................. TTCCTCTCTCGGGCGCAATGCAGGTATGAACA 399583 29 100.0 32 ............................. TGCCACCAGCGGCCGTCCGACCACTGGTTAAT 399644 29 96.6 32 ........................G.... ATCTTCGCAGGCTCCCGCATCAGGGACTCCCG 399705 29 96.6 32 ........................G.... AGGTTCGCGCGCTGTTGAAGCGTGTCGGTCAC 399766 29 96.6 32 ........................G.... GCAGGCTTGACGCCCTTCTCCCACAACCAAGT 399827 29 96.6 32 ........................G.... ATTCAGTACGTCGACGTGGTCAACATGTATGC 399888 29 96.6 32 ........................G.... GAGCTTCGCGGCCTGAGAGTGGGAGCCGGGCT 399949 29 100.0 32 ............................. CCATTCCGCGCTCGGTGACACCGATCGAGGCG 400010 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Left flank : CGGCGCGCTCCCCTGGCCAGCGGTAGCTTCGATCCCGGGGCAGCCTGACCACTCGGCGCTGCGCGGACGGCCTGCGGCCGTGAAGGCCGGCTCATGTTTGCTTGCTGCAGTACGACTTGCCACTCCCCCGAGTGACCACCGCCGCCATTCCGCCCGGCGGCTTTCGTGCCGGCGCTATCAACCCGTCACCGAGCCCACGGTCGGCGCGGGCTGCAAGCGTCGACGAGGCGGCGGTGGTCGTTGTGCAGGTGGCGGCGTCGCCGATGTTGTCCCAGACGTAGCGCGGCGGTCCTGGTAGACGTCGCGTCGGTTGTCGCGGCCGATGCCGGTGTGGACGCGGACCTGGCTGTGGCCGTTGAGGCGGAGGTTGCTGAAGCGGTAAGCGTGGCCGACAACGCCCCCGATCAAGACACTAGACCGATACATTCACAGAGGTGCACAGCACACGTTCCTTGATTCAAGAATCGGCAAAGCGCTTCCAACACCGCAGGTCGCAAAGG # Right flank : GGCATTGCCTCAGGGATCGAGGACACGTGGGTTCCAGCCGTCGCAGTCGACACCGAAGACGACGTGTACGCCGAGCTGAAACAGCGCTACCGCAAGCTGAAGAGCGTGAGCTGACAACCAAAGCCCCGCCCATACCGGGCGAGGCCTTTTGCGTACACCGGATCAGACGGTCACCGCGTCCTCCCGTAGGAACGTTGCTGGACACTGCCGGCAGATCAGCGACCGCGCCCACTGGGCCCGCGCATCCTCCGCAGCCGACGACTTCCGCCACAACCAACCCCCACACCGATGCCGCCGGCCACCAGTAGAAGCCCCGCGGCGACCGCACCCGACACCAGCGCCACCACCCCCAACGCGCACGCGCCGGCCGGCAACAACAACTGGGCCTTGTACTCGGCGGGCTGGCCGTAATTGCCGTGCAAGGCGTACCAGAGTTCCACGACCTCCACTACCGTCGTCAGATGACATGGTTACCGCTCTTCGGGACTGTTCTAGGAGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Alternate repeat : GTGCTCTCCGCGCAGGCGGAGGTGGGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 401726-404803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050976.1 Streptomyces sp. RPA4-5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 401726 29 96.6 32 ........................G.... GAGCGCCTGGCGCACCGTAAGGAGATGGCGGC 401787 29 79.3 122 .G..........G............TTTC GTTCCGGGCCGGACAGTGCCTCCAGAGATCCGTGTGGCCCGGTAGATTCATGCGGGTGCATGACCGGCCTTCCTTGAATCACGAATCGGCAAAGCGCTCCTAACTGTGCAGGTAGCGAAGGG 401938 29 100.0 32 ............................. GTCTGGTTGCCGACGAGGGGGCCCTGTTCGCG 401999 29 100.0 32 ............................. GCTGGCCTTGTTCTGGAAACGGGCCTCCTCCC 402060 29 100.0 32 ............................. TCCAGGTTCTCCAGCTGGTCACGGTTGGCGGC 402121 29 100.0 32 ............................. AGGCGCAGCGCGCGGCGGTAAATGAAGCGGGC 402182 29 100.0 32 ............................. GAACGCCGGCTTCGCGCACTGGAGTCTCTGGT 402243 29 100.0 32 ............................. CTTCGCCGCGATTTCCCGGGTCGAGGTTCGCG 402304 29 100.0 32 ............................. CAGGTCGCAGCCCGCAAGCTCCGAGCCGTGCG 402365 29 100.0 32 ............................. AACGCCGAGGAAGAGCGGCTCCTCGGGGTCTC 402426 29 100.0 32 ............................. GTCAGGATGCCGTCCGGCTCCGAGACCGTGAT 402487 29 96.6 32 ..................A.......... TTCTCGCCGCAGGTGACGGGTTCGAGGTGGTC 402548 29 96.6 32 ........................G.... CGTTTCGCCCGCGAGGTCGAGATCGGCAAGAC 402609 29 89.7 32 T.................A.....G.... CTGGTCATTTGCAGGCGACCGTCCCGGATATC 402670 29 93.1 32 ..................A.....G.... CTGGTCATTTGCAGGCGACCGTCCCGGATATC 402731 29 93.1 32 ..................A.....G.... TCGAAGGCGAAGATTGGCAGCGCGAGGGACCC 402792 29 89.7 31 .........A......T........A... CGTGGCCCAGGTGGCTGCTCGTGCGGTCCAC 402852 29 79.3 32 TATT....................G.T.. GCATCAACGAGCCGGACACCGCGCCGGACGTC 402913 29 100.0 32 ............................. TAGGGGGCGTTGTCCTCGATGCGGTCCGTCCA 402974 29 93.1 32 .................C......G.... TCGGAGTTCGCCCGCAGGCTGCTCGTGCACCT 403035 29 93.1 32 .................C..C........ CGGGCGGCGGCGGGGTGGGAGCGGCCGGGGTG 403096 29 93.1 32 ........T.....A.............. AAGTGGACGACGCTCGAAGGCCAGACCTTTAC 403157 29 89.7 32 ..........T..............A..A GAGATGGAGCGCCTCGAACCGCACCTTGAGCG 403218 29 86.2 32 ..C..........GA..........A... CCGCGGGATGCCCGTCCGCCGAGCTGCATCTG 403279 28 75.9 122 .C......TA.....A....-.....TG. TTCTGGGCTGAGCAGTTGCCTGCGAGGGCCCGTGTGGCCCGGTAGATTCAGGCGGGTGCATGACCGACGTACCTTGAATCACGAATCGGCAAAGCGCTCCTAACGCTGCAGGTCGCGAAGGG 403429 29 96.6 32 ............G................ ACCAGCTGACCGGCGTCACCATCGGAGACGTC 403490 29 93.1 32 .........A..G................ TAGGGGCGACCGGTGTGACCGCTGTGGATGTG 403551 29 89.7 32 .C......................CT... CTGTTCATCTGCTGCTGGTACTCGTTGCCTTC 403612 29 96.6 33 ........................G.... CTGGTCGAAAGAGAAGGGCTGGTACCTCGGTAA 403674 29 96.6 32 ........................G.... CCCAGCTCCAGCAGGTGCAGCAGAGCCTCGCG 403735 29 96.6 32 ........................G.... GGCGACTCGTGGTTCATGGACGCCGCGCATTC 403796 29 100.0 32 ............................. TGCCACCAGCGGCCGTCCGACCACTGGTTAAT 403857 29 93.1 32 ...................G.....A... CGTGGCCCAGGTGGCTGATCGTGCGGGTCGAC 403918 29 86.2 32 T.TT....................G.... CACTACCGGACGCAGAATCTCAACAAGCTCAT 403979 29 93.1 32 ........................G...A GCGTCGACCCGGGCCACTATTCGGTGCGAACC 404040 29 96.6 33 ........................G.... CTGAAGAAGCTTGCAGGGTACGGCCAAGGCCAC 404102 29 93.1 33 ....C...................G.... ACGGGCCGGCGCTTTCTGCGGGGCAATCCAGCT 404164 29 93.1 32 .......G................G.... GCCATCCCCCTGTCCGGCACGACCGCGAACCT 404225 29 89.7 32 ...T........G....A........... TTCCAGCGCAGGACGGTGATCCGCATAGGTTC 404286 29 100.0 32 ............................. CCCAGCGCCCAGGTCAGCAGCCAGCAGGCGAA 404347 28 79.3 34 ..A..........GA.........-..TC CGGTGCTGGCGCTCGGGACGTTCGCCGCGTTCAC 404409 29 93.1 32 .............GA.............. GCCGAGGCCGCCGAGCGAGAGCGGGAGCGTGC 404470 28 82.8 32 ............-..ATA.......A... GCGACCCAGGGGTTGTTGACGAGGACGCGTAC A [404485] 404531 29 89.7 32 ...T........GG............... GACTTGCGCCCCGTCGGCCCTGTGTACAGGCC 404592 29 96.6 32 .G........................... TCCGCGCGTGAGGCACGCGATGCCCTGCTGGC 404653 29 96.6 32 .G........................... GTGTTGACGTTCGTTCTGCTCGGGCCGTCGGT 404714 29 93.1 32 .G...............A........... CTGGCGGGCGAGATCCGGCAACGGGTTGCCAA 404775 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 48 29 93.5 36 GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Left flank : CACCAGCCCCCGCCACCAAGACAGACACGTTACTAGGAACCATGCTCCGCACCCCCTTCCTCACGCGCTCCGTGACCCAACGACGCCCCTTCTTCGAGAGGACGTGCCAGACGAGTTCGGACATGTGCAAGACGAGCAAGAGGACGGAGACCGTGACGGCCGGACTCGAACCGGCGGCCTGACCCCAGCTGAACCAACGGACGCAAACACACTACAGGCCCGCCCGCGTGCAGCAGAGGACACGGTCCAGGCGTGCACCAGTGAGCCTCTGCGCCGCCAGCACGAGGCGGCGTGGCTTCGCTGTGCAAGTCAGACCGCCAGGCCTCCTCCGCCAGGAACCGGGCCGGTCACTGCCGGCAGTACAACCACTGCGCCCACCTGGCCCGCGTCGACGCGCTGGCCGGAGGAACACCTGAGATGCGACCCTCATAGCAGCAGCAACCCACCCGGAATCAGTCGGCTCGGAAGACCGATGTGACGCCCCCTCGATCTAGTCCACG # Right flank : GCCCCCCCTACCGCCAAGCCTATGGTGGCCTCGCCCGGGCGGGCTGGGCCATTCATCGGGGCGAACGGGCGCTTGCCGCTCCCGCACCCGCACGCTGGCCATCGCAGCTACCGCCCAGCACGCGGAGCGCAGCCCCTTTGTGCCGCCTAGTCGGCGTGTGGGGCAAGCCGGCGAGGGTTCGGCACCGGCGCGGCGGATTTCGCAAGGCTCGTCCCGATGCGGACGGTCAGTCGGCTTGAGCCTCGCGGGGTGCGATGCCCGGCCGGACCAGGTTGAAAACTTCCCGGGCAGCGTAGCGTTTGAGGCAGCGGATGATCTCGCGCCGGGTTTTGCCCTCCGCGAGGCGTCGCTCGTAGTACTTGCGGGTACGCGCATCGAACCGGAGCCGTGTCTGCACGATGCGATATAGGGCGGCATTGGCTCTTCGATCGCCGCCGCGGTTGAGGCGGTGGTGATGCTGACGGCCGGAGGAGTACTCGACGGGGCTGACCCCGCAAAGC # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.31, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 406631-406418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050976.1 Streptomyces sp. RPA4-5 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 406630 29 82.8 32 AG.ATT....................... TATGTTCCAACCACTGCGGGGCGTGGGTACTT 406569 29 86.2 33 GT.T........G................ GTGAGGGAGGAGTCGGCTGCGGAGCCGTCGCCG 406507 29 100.0 32 ............................. CAGCACGTCGTCGAGGCGATCCGTGAGGGCAC 406446 29 79.3 0 GT.........ATT...........G... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 87.1 33 TCCCGCTCCGCGAACGCGGAGATGCTCCG # Left flank : TCTGGCAGGACGGTCCCACCTGGCACAGGTTGTAACCCGTGTCCTGGGGCCTCCAGCCGAAGCAGGGAGTGGCCCTCAAGACCGTGTCGGAGCCCCTGAGTCCGGGGGCGTCCACACAGTCTGTGAGACGCGTGTGAGAGCGCGTGCGACAAGGAGCCCCGTCGGAACGCTCGGCGGGGCTTCTGTGCGCGGCGGGCTATGACGGCGCAGTGTCAGGCTTGGACGCTGTTGTACTCCGGCTCTCCACTTTCGAGCACGCGGAGCAGGGACGCGGTGACGACACGTGTGCTACGGCGGATACGCAGCATGCGGCATAAGAACTCCCCGCGACGAGCCAGTTCGTACCCCTTCGCCCGCGAGAACCCCAACGCCCTAGAAGTGTCTTCCACGCTCCCTGTTCCGTCCCAGGTGGCGTGGATGCTCGTAGGGATGCCGGGCACCCATCTCCGCGTGCGCGGAGCGGACGGATTCGCGGCCTCCGGGTTCGCCTTGCGGATCGG # Right flank : CTATATCAGATCACCACGTCTTGAAACAGCACCGCGCTCCGAGTGATCGCAAGTCGTGGGACCTGGGTATACCGGTTGGAGTACCTGCGCACTGGGCTCTGGCTCGTGAGAAATCGGATCTGAGTGTCCGGCCTGTCCTTTGCCGATCACCAGTGCGAGGTGTACTGCTGCCGGGCTGCTGAGGCGTGTCCCGAGGTGAGCCGTGCCGAGAACTGGGCATTTTCTCACCACTGACCGCCTCGACGGCCTGGTGGCGAGGGCCGGCAGGCTCACGACAAAAGGTGCGCCATGACTAGTATCCCAAGTCGCCAACCTCGACTACCTGTTGTGGATGAGGTGGTCCTAGGTGTGGACACCCACCGGGATGTTCATGTGGCCGCCGTGCTCTCCACGCTAGGGACGATTAGGGACACCGCGTCGTTTCCCACCACCACTGTGGGTTATCGCGAACTGTGGGAGTGGGCCAGCCGGCTGGGTACGGTGTGCAGGGCCGGGGTGGA # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCGCTCCGCGAACGCGGAGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //