Array 1 226-1994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZAM01000329.1 Vibrio sp. S234-5 contig329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 226 28 100.0 32 ............................ TGTGCGCGTTCCCCAGCGTGGCTAAGCCACAT 286 28 100.0 32 ............................ TCGCGCCCTGCCAAGCCCTAATCAGATTTTCA 346 28 100.0 32 ............................ AAAAAGACGAATACCGGGCGTTACTAGAACGA 406 28 100.0 32 ............................ TCTCTAGTGGGGCGCATTTTTACTTTTTGATT 466 28 96.4 32 ........................A... TTGACGCGGCAAAGGGTGGGCGAATGACTTGC 526 28 100.0 32 ............................ CGCAGGCATTGCAGCACCGCCCCCCGCACTTT 586 28 100.0 32 ............................ TTGCGACCATCGTAGAAGCTTGCTTGCAGATC 646 28 100.0 32 ............................ ATTTCAAACGTGCCTTGCCCGAATGCGCTAAA 706 28 100.0 32 ............................ ATCAGGATTTGCAAACTTAAACGAAATTGGCT 766 28 100.0 32 ............................ CTTCAGATACCGGTGCAACGTTCCGTGCGAAA 826 28 100.0 33 ............................ CAGAAGAGGCTCGTAAAACAGCACAGTCACATA 887 28 100.0 32 ............................ CTAGAAGACATCCAGCAGCTTTACAAAGGTAA 947 28 100.0 32 ............................ TCCCCTTTGGAGTTAATGCTATCAAGGCCCGC 1007 28 100.0 32 ............................ GTTAAGGAAGTGGCAAATGCAAAACCAAAGGA 1067 28 100.0 32 ............................ TCACCACGAAAAGAACCAGCCCAAATACAAGT 1127 28 100.0 32 ............................ TGAATCGAAGACTCTAAGTGAATCATCTCTCC 1187 28 100.0 32 ............................ AATCTAATGATTTCTGTACAGGTTTCATCACT 1247 28 100.0 32 ............................ AGAACGAAACAACCACGGTCACGCTTTCATCC 1307 28 100.0 32 ............................ TTTTTCGAGTTGCTCAACAACAGCATCAGGTA 1367 28 100.0 32 ............................ TTAAATGAGGTGTCCGAATGAAAGCACAAATC 1427 28 100.0 32 ............................ TCCATAGCGCAACCAATCTGTACGCAAGCATC 1487 28 100.0 32 ............................ ACTACCGGATGCGTGATTGCACGTCATTCGCT 1547 28 100.0 32 ............................ TTGTTGTTGGTTCTGGCTTTCATTATCAAAAA 1607 28 100.0 32 ............................ TTGTTAATCAATTTATCTCGCTTTGTTGTAAG 1667 28 100.0 32 ............................ GTTAGTGCGCATTATGTGGTGCGTCATTATGT 1727 28 100.0 32 ............................ GTTTCGAAGGTCGCGCAAAGAAACGTTACATC 1787 28 100.0 32 ............................ TATCAACGGCATTGCTAATTAAAGAATCCAAG 1847 28 100.0 32 ............................ ATGAACTGGTTGTACGCAGTGAACGTCTGTCC 1907 28 100.0 32 ............................ GACAAATGAGTGTCAAGGGGTCGTTTTTCTAG 1967 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAAGTTCCGAGACCGTCTACACTCGCTAATCGAAACGTGTAAAAAGCGAAAAATATCGTCACTTGATACGCTTTCACGCATAGCCAACGCGGTGGTTCGTCAGCAGCCATACCCAAATGTGTTCGACCTTAAGCACACGAGTTTTTATCTAAATACCTAGTCAACATGCTACTGGTGAACGCTTACTAGAAATTTTGATCGAGCAAAAGCGCAAGCGGCGATTGG # Right flank : AACAAAAACGCCACGAGCAAAGCTGGTGGCGTTAACATCAAATCCAATCATAGTAATCGAGCATTTTCGATGCGCCTGTACCCCAAGCCGTACCCAGGGTGACTTTTTCTACAATTAAAAACCTTTGAATCCCTTATTTAATGCGCTCCAGCAGTACACCTGCTTCCATGTGGTGGGTGTAAGGGAACTGGTCAAACAGGGCGAAACGAGTAATGGTGTGGGTTTCGCTCAGGATTTCGAGGTTCTCAAGCAGGGTCTCTGGGTTGCACGATATGTACAAAATGCGCTCATAGCCTTGCACCATTTTACAGGTGTCCACATCCATACCTGCGCGCGGTGGATCGACAAAAATGGTGTTGCAGTTATAGCTCTTAAGATCGATGCCATGGTCTTTCAGGCGGCGAAACTCGCGTTTGCCTTCCATCGCTTCGGTAAACTCTTCCGCTGACATACGGATGATCTGCACGTTCTCAATTTTGTTGGCGGCAATGTTGTATTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 52381-52948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZAM01000142.1 Vibrio sp. S234-5 contig142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52381 28 100.0 32 ............................ TTTTAAAATAAGGGGCCAAGAGTTACGTTGGC 52441 28 100.0 32 ............................ TCACTACCGCAGACATACCCGACCGAATTAAC 52501 28 100.0 32 ............................ AGAGTTAGTTCAGCAGCTTGAAGCCATTCTTG 52561 28 100.0 32 ............................ CATACTAAATACCAGATTTGTGACTTTGTTCA 52621 28 100.0 32 ............................ TCTGGGATTAGCTCTTTGCACTCAGGCCAAAC 52681 28 100.0 32 ............................ TTTTGATGAACCCTGAAACAGACAAGTATGAG 52741 28 100.0 32 ............................ ATTGTGATGACTCACTAGCAGCGCGTGGCCGT 52801 28 100.0 32 ............................ TTCAGAAGAATAAAAAACAAACCCCTCGCTTG 52861 28 100.0 32 ............................ AACTACATCCTGACAAACGGGCTAGGAAAGTC 52921 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTTTAGTGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCCGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTAAGTAGCAAAGCGAATGGGCAGTCAATATTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATAGTTGCAATAGGTGGGTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATTGTAAACTTTCACCAGCACCGCATTGACAGCAAAAAAAGTGTGATCATTAGCACTGGATCCCATTTTGCCTATTGAGTGATCATTCCTAGCGTTCATGCTGACTGCATGACTAAGAAAAAATCAAAATTCTCATCCTCACCACCTATTGCCTCAGACATTAACGAAGCGAATGCGTTGATATCCGAGTTATGGGAACAGTTGCGCCATTACGAAGATAGGCTAAAAACCAGCAGCGCTAATTCCTCTAAATCACCATCATCCGATGGACCCAAAGAGCGGGCTGAACGAAAAAAGCTCAAAGCTCTAGTGGTCGCCATCCGAGAGGAGCTAAACAGGGTCACGAAGGGCATAAACGACAACTCTCAGAACTAAAAGGATCCGATACGGTTGTTGATTGTTACCCCGAAAGCACATGCCCTTGCTGCGGTGACGCTGACCTCAAAATGAGTGACAAACCATTTTATCGCCACCAAGTTCATGAAATCCCAGCGCCACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //