Array 1 335607-336690 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJESU010000001.1 Staphylococcus pseudintermedius isolate 17S01341-1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    335607	    36	 100.0	    30	....................................	AAAGAATTAGCGAAAGCTAAAGAATCGGAT	
    335673	    36	 100.0	    30	....................................	CGAATTTAAACTTTTCAATCAGTTAGTAAA	
    335739	    36	 100.0	    29	....................................	AATTAGTTGAAGCGGGTATGTCAGATAAA 	
    335804	    36	 100.0	    29	....................................	CTAAATGCGTCTTGCTACTCACACCACTG 	
    335869	    36	 100.0	    30	....................................	ATTTACATTTAAACGATTTATTCGGTCGCG	
    335935	    36	 100.0	    30	....................................	AGTAATTTTTATATCTGCTTAGCGCAATAC	
    336001	    36	 100.0	    29	....................................	TTTAATGTTGCAAGATGATTTTCCAGAAG 	
    336066	    36	 100.0	    30	....................................	TTGGTTTTCGGACAGTTTAGTGTCTGTGAC	
    336132	    36	 100.0	    29	....................................	TACTTTAATCTGGAAAGACGGGGAGATGG 	
    336197	    36	 100.0	    29	....................................	ATGTCATCGTTTAGTATGTGGAATGCTCT 	
    336262	    36	 100.0	    29	....................................	AATCGAATCTTGTTTTGGTCGACTATTCC 	
    336327	    36	 100.0	    29	....................................	AATCAAGAAGTGATGAATCTTATTGGGAT 	
    336392	    36	 100.0	    30	....................................	GGTATCCAATATTTGCGCCTACAACATTAT	
    336458	    36	 100.0	    29	....................................	AGCAAAACGGTTCAAACGTTGGGTAACGT 	
    336523	    36	  97.2	    29	............................A.......	TCACAAACCGTTTATGAAAAAAATACATC 	
    336588	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    336654	    35	  83.3	     0	T........T................-.CA.C....	|                             	TC [336686]
==========	======	======	======	====================================	==============================	==================
        17	    36	  98.7	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATAGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCCGAAAACATTGTCATTCGCTGA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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