Array 1 128153-126188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHIBG010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SBJ06P NODE_2_length_601207_cov_86.128971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 128152 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 128091 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 128030 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 127969 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 127908 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 127847 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 127786 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 127724 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 127663 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 127602 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 127541 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 127480 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 127419 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 127358 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 127297 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 127236 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 127175 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 127114 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 127053 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 126992 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 126931 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 126869 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 126766 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 126705 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 126644 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 126583 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 126522 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 126461 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 126400 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 126339 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 126278 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 126217 29 96.6 0 A............................ | A [126190] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145777-144284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHIBG010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SBJ06P NODE_2_length_601207_cov_86.128971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145776 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 145715 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 145654 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 145593 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 145532 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 145471 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 145410 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 145349 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 145288 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 145227 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 145166 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 145105 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 145044 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 144983 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 144922 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 144861 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 144799 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 144738 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 144677 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 144616 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 144555 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 144494 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 144433 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 144372 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 144311 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //