Array 1 26716-25842 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWR01000011.1 Pseudoscardovia radai strain DSM 24742 Contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 26715 36 100.0 28 .................................... TGGTTGGTGTCCATAGTTCTCGCCGGCC 26651 36 100.0 28 .................................... TTTTCCGCCGACGCTACACGCGCCCATA 26587 36 100.0 28 .................................... AGGCCCTTCCTTCGATCTCCAGTTCCTT 26523 36 100.0 28 .................................... AAGGAACGCGTCCCTGAGGCTCAGGGTC 26459 36 100.0 28 .................................... CCCTCCGGGATCTGGAACGAGTCCGAGT 26395 36 100.0 28 .................................... TCAAGCGCGGTAATCGACGTGGCGACCA 26331 36 100.0 28 .................................... CCGAGGACGATATACGCGAGGCCCTCAA 26267 36 100.0 28 .................................... TATCGTGAGTGGATCCAGCCGGGCAATA 26203 36 100.0 28 .................................... TTTGGATCGTGGACACTTTGCCGTTAAC 26139 36 100.0 28 .................................... GAGGAGGTCGCCGTTATTGCCGGGCTCC 26075 36 100.0 28 .................................... CGGTTTTCCATATGCGCAGTTTGCTATT 26011 36 100.0 34 .................................... GAGATGAGCGTGTCGGACCCGTCCTTGCCAAGTT 25941 36 91.7 28 T.TC................................ GGATTCATTTCCCGGCACTTTATTAAGG 25877 36 77.8 0 .............G.A.........C..CGG.G..A | ========== ====== ====== ====== ==================================== ================================== ================== 14 36 97.8 29 CAAGTTTATCAAAAAGGAAGGATGCTAATTCTCAGC # Left flank : T # Right flank : GGAGGATGACAGCACACTATAAACGCTGAGCTTCTGACAAAGATGCGGGCGGGGCACAAGAAGGGGCAGATGACACGAAAGCGGGAGAAGGAACTCGTGAACCTTGCTTCGTCTGAGACGGCAGCTTATTTAAATAGAAGTGCCGGGATTCATGCCATGGCTCTTCATTGAGGGGTTGACCAGAGGTACGCGCCACGATTGCTGCCATGTGTAGCGAACCGGCCATCGAGCTAGGGACATGTGCACCACCGAGCCAAGGGCATATGCCCTCCTACACTGCCCCCGCACCTATTTCCGCAGCCCCGGTGCCTTTGCCGCAAGGACCGCACACACCGCCACGAGCGGCAGGGTAGTGGGCGGGAAGCATAGCGCGAGCACGACGATCGTGAGCACCGGCTTTCGCGTGCAGGCGCTCACGAGGGCTGCGGTGATGCATGCCACCGCGATCATCGGGTCACAGCCGGTTGCCAGCGCCAGCGCATATCCTGCGCTCACCCCGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAAAAGGAAGGATGCTAATTCTCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 19530-19217 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWR01000007.1 Pseudoscardovia radai strain DSM 24742 Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================= ================== 19529 27 100.0 45 ........................... GTGCTTTTTCCCGCGATTTCGCTGTCTCTGTTGCGCAATGGCCGT 19457 27 96.3 45 .........T................. TCGTTTTTCCGCACGATTGGTCCGATGGCCGCCCGGGGTGTTGCC 19385 27 100.0 44 ........................... GTGCTTTTCCCACGATTTCGCTGTCCCCGTTGTGCAATGGCCGT 19314 27 96.3 45 ..............C............ GGCCGGATTTGCGTCTTAGCCTGGCCAAGGCGGGTGCATCGTGGC 19242 26 92.6 0 ..............C........-... | ========== ====== ====== ====== =========================== ============================================= ================== 5 27 97.0 45 TCGTGGCGAGGATTGTTCGCCATGAAG # Left flank : ATTTTCATGTCTCCCAATCTATCCGCATTCGCGCGCGCGACATAACCGTATGTCGAATAGCGAACCTGGCGCCCGGACGGGAGGGTGCGGCGGGGCGTGGCGGGGTGGCGGGCTGTGGCGGGGTGGCGCGGGCCGTTGAGTGTGAGTGTTCGTGTGCGGTGAAGGGCGTTGAGTTGGGTTTTGCGGGGTTTTGGTGGGGTCGGGGCCCTTCAGTGTGAGCGTTTGTGCGCGGTGAAGGGCGTTGAGTTCGGTTTTGCAAGGTTTTCGCGGGGTCAGGGCCGTTGAGTGTGAGTGTTTGTGTGCGGTGAAGGCGGTTGGCTTGGGTTTTGCGGGGTTTTGGTGGGGTCGGGGCCGTTGAGTGTGAGTGTTTGTGTGCGGTGAAGGGCGGCGGCTCGGGTTTTGCGGGGTTTTCGCGGGGTCAGGGCCCTTCAGTGTGAACATTTGTGTGCGGCGAAGGCCAGCGGCATCGTTTCGTTCCCTATGCCAGGTCCCCGCTCCGT # Right flank : GCTTCGCGTGGCTCTCACATTGTTCTTGGGACGGGGAGGCTGGGGCGTGTCGGGGACGGGGAGGGGCCTATTGGAGGGCGGTTCCATCCCCGGCGATGGCGGTTCCATCCCCGGCGATGGTCTTGGCGGATAACAATGCGATGGCTCCGACGACGGCGGAACGATGGGAAAATCGTGGAGGAAGCGGGGGATTGTGGCGGCATGGCGCGGCCTGTTGTATACTGTGACTTTGCATGCGATGAGGGCGACGCGCGTCAGCGTCCCCGTCGCCGAGTCTCGGTTATCAAAGCAGTCTGGAGCACAACACTATGCCACTGGGTACCAGCCCCGAACCGAAGGGCCTTGCCGATCCGCCGATCGACGACCTCATGAAGCGCACCAACCACAACAAGTACGCGCTCGCGGTGTTCGCCGCCAAGCGCGCACGCCAGATCAACTCCTACTTCACGCAGCTCAACGAGGGCCTGCTGCAGAACGTCGGCCCGCTCGTGGAGTACCAG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGTGGCGAGGATTGTTCGCCATGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 84592-85203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWR01000017.1 Pseudoscardovia radai strain DSM 24742 Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 84592 36 100.0 28 .................................... TATGCGCTGCGCACAATCATCGGCGGGC 84656 36 100.0 28 .................................... TTCCAGTCATAATAGTCACTCATTGCTC 84720 36 100.0 28 .................................... CAGGCGGCCGTCCATGCGCGACGTTGAA 84784 36 100.0 28 .................................... CTCTCTTCGCCATCCCGATGAGCGTCGC 84848 36 100.0 28 .................................... ACGGTTGCCGTCGATAAGAATACGGGGC 84912 36 100.0 28 .................................... TTGTCTGCCATTTGTCTACTCCGTCCTA 84976 36 100.0 28 .................................... CGGTTGGAGTCCATCGATCCATCCGCCC 85040 36 100.0 28 .................................... TTTTCCGCCGACGCTACACGCGCCCATA 85104 36 100.0 28 .................................... AGGCCCTTCCTTCGATCTCCAGTTCCTT 85168 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 100.0 28 CAAGTTTATCAAAAAGGAAGGATGCTAATTCTCAGC # Left flank : GAGGCCTCACGGTGCCTAGCTCGTTGAATGATTTTGCTCAGCAATATGGTTTGTATTGCGAGGGTAAATGCGACCTGCTGAGAGTGCCAGTGTTTGGGGAGAATAACAATGAAGAAGGATGAGGAGAGTGGCGGCATGTGGTGTGTGGTGATGTTTGACTTGCCTGTTGAAACCAAGATGGAGAGACGAGCTGCTACTCAGTTCAGGGATTTGCTACTCGACCAAGGTTTCATGATGGTGCAGTTTTCTGTCTATGCGAGATATACACCGACACTTGGTGGGAATCGATCAAGCATTGAATTCATCAAGAAGAACATTCCTGCGAAGGGAAAAGTCAGGATTCTGAATCTAAGCGATCACCAGTGGACTCAGTCGTTCCACTCTTATGATTCGCAGATTGGGAATCCGAATGATGGCCCAACTGCCCCAGGTGCTCTTACGCTTTTTTGATCGTAAAAACACCTGGAAACGTTGGGATTCCTTCCTTTTTGATGAACTCT # Right flank : AAGGAACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAAAAGGAAGGATGCTAATTCTCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 56174-55860 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWR01000018.1 Pseudoscardovia radai strain DSM 24742 Contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 56173 25 96.0 47 .C....................... GCCCAATCGTAGGAGAAAACCGGCACTCCGAACCAAACCAAGCCTTC 56101 25 100.0 47 ......................... CGCCCGCCGAGCGCCAAAGCACCCACCGGAACGGAAAACCACCCCTC 56029 25 100.0 47 ......................... GCCTAATCGTAGGAGAAAACCGGCACTCCAAGCCAAACCAAGCCTTC 55957 25 96.0 48 ........G................ CAACAATTCCGACACAAACCAGCCAGCCCGAACCAAAACCAACCCTTC 55884 25 88.0 0 ........GG.............G. | ========== ====== ====== ====== ========================= ================================================ ================== 5 25 96.0 48 ATGGCGAACAATCCTCACCACGAAC # Left flank : GCAGTCCATTGCTGCGCGCGCCATGGGCGAAGTCGGCCATGAGTTCGGGCGTGCGGTGGGCGGAGATCACCTGCTTCATATACGGCACCTCGAAACGATCGAGAATCTCGCAGGCGTGCTTCATGGTCTCCCAATCGCTCGACGAGCCCATGACGACGGCAACAAGCGGCTTGTTCTCAGGCATTTTTCCTCCATCGCCGGTCCCGCATCCTTTGCGGGTCACGACTTTCCCAGTCTACGCGACGGGTGGGATTGCGGGGAGCGGCGGCTTCGACGTCGGTGCCGGGTTGGATGACGGCGGCGACGCGCGACGACGGGGCGCACGATGACGAATCCGCGTGCTGTGAGTACAATGCCATGTGGAGCGATGACCGCTCCGCCGCCCCAGTAGCTCAGTTGGATAGAGCAACGTCCTTCTAAGTCGGAGGTCGCCGGTTCGAATCCGGCCTGGGGCACCCGACTCCCCCGCCCGCCCACGCCCTCGCGCCGGCGGGCGGTTT # Right flank : CGCCCACCGAGCGCCAAAACACACTCGGCCCCGGCAACGCCACAAAATCATCAGCGTTCCGGCGCCTTCGCCGCTTCCGCCTTTCGCCGCCACCGGTCGGCTATCCGATGCAGCGGCAACGGATCGCGCACCGGAACCTTCGTCCGGCAACGCCGCTCCATCCGCTCGGCAACGGCCTTGGCAATCTCCATTCTCCTCGCATCATTCGCCAAATCCGGTCGGAAAACACCGAGTCGAAGCCATTGAGCATTGTCAAGCGCACGGATACGCGCCTGGTCATACTCCCAATTGTCCGCATGCTGTCTTCCGTCGTATTCAACCGCTACCTTGACCTCCGGATAGGCGAGATCCAGATAGAAACAGCGCTGCTTCCCGTCCGCCCCGGTACACGTCACCTGATGGTTCACTTCCGGACACGGCAATCCATGACTGACCAGCGCCAAGCGCAATTGCGACTCCATGAAGGAATCCGTATTCGCCCGCATCAGCCACAAGGCGCG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGCGAACAATCCTCACCACGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //