Array 1 166990-169092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLKX01000012.1 Trinickia caryophylli strain HAMBI_2159 BPHLMDMA_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166990 29 100.0 32 ............................. CGCGTCGCAGGGACGTGTTTCTGCAAGGTCGA 167051 29 100.0 32 ............................. GCGGCATGAGCGATACCAGCGAAATTCAGATT 167112 29 100.0 32 ............................. TCGAGGACACCCGTGAATTCGTGCTCGTGGGC 167173 29 100.0 32 ............................. CTGACGTCCAGATGAATTTCATGACGCCCGTA 167234 29 100.0 32 ............................. CGGGATCACAGTAACGGGTAACGCAACGATCA 167295 29 100.0 32 ............................. AGGTGGCGAACGTCATAGAATCAACTGGCTCA 167356 29 100.0 32 ............................. ATGTGATCTTCCAGATGCTGGACGAGTGCACT 167417 29 100.0 32 ............................. TTGAGGGCTGGACGCCGGAGCATGATGACAGG 167478 29 100.0 32 ............................. CATGATCGCGGGCGTGACGCTCGTGGCGAGGA 167539 29 100.0 32 ............................. CCCTCGAATCGCAGCTAGCGGCGCGAGAGAGC 167600 29 100.0 32 ............................. CTCTGGAACAACGGCGGCACTCTCTCGGTTTC 167661 29 100.0 32 ............................. CGCTGATCGTTGGCAAGGACGGAATCAAATCG 167722 29 100.0 32 ............................. GCGGTGATTATGGGGTGCTGTTCTACGCGCAT 167783 29 100.0 32 ............................. CACGACGAACATCATGACGCCGAGCACCGTAA 167844 29 100.0 32 ............................. CCGGCCCAATTGGTGACGGGCAGACGCGGGAT 167905 29 100.0 32 ............................. CCTTTGAGTATCCATAGGGGGGCTGCGTGACC 167966 29 100.0 32 ............................. GATTGCCGCGCATTCCGCTCGGTCGCGGGCAC 168027 29 100.0 32 ............................. ACGACGAGCTGGGGTAGCGGCGTCGAGCAGAT 168088 29 100.0 32 ............................. CGCTCGTAGCCGCCGCTCGCGTTTCGCTTGAG 168149 29 100.0 32 ............................. TGCGTCATAAAGGAATGCAGCGGGAACGCGAT 168210 29 100.0 32 ............................. CCAGTCGGCCGCGGCTCCCCCGTCGGAGACAA 168271 29 100.0 32 ............................. CGTATGAGCGCAGTCGAAGAACGGCAAGACGC 168332 29 100.0 32 ............................. GCCGGCGTCAGTAACTTCTACCTAAATGGGGC 168393 29 100.0 32 ............................. CCCGCTTAAGCAGCTTCTCCCGGACTACAAGG 168454 29 100.0 32 ............................. GTGTACTCGGTGAGCTACGAGTCGGCCCTGCG 168515 29 100.0 32 ............................. ACGGCGGGCGTCTCCACGCGCAAGGTCTGGAA 168576 29 100.0 32 ............................. CAAGCCTACGAGACGTTCAAGGCGCTGTCGCA 168637 29 100.0 32 ............................. GTTCGATAGAGTAATACGCGACCCACTCGCCG 168698 29 100.0 32 ............................. ATCAATTCGGTGCGATGGCGGGCGACGACAAG 168759 29 100.0 32 ............................. AGCATGATAGGGCTCGGCGTGAGCCACGCCAG 168820 29 100.0 32 ............................. GATCAGCCGTGGCGTTGTTTGCTGCGGTCGTG 168881 29 100.0 32 ............................. CACCTCGTCGATGCCGCCCAAGGCAAGCATCC 168942 29 100.0 32 ............................. GCAATCATCAGCGGCGGCCTGACGCTCAGCGC 169003 29 96.6 32 ......................C...... CCTATGACGAGGGGATGGCCGAGCTCGAACGG 169064 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : TTCCGGACATCGAAACGTTGCTTGACGCCGGTGAGCTAGCCAAGCCAGAAGCGCAGGGCGTGGTGGACGCGGCATTCCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCGAGGCTGCGAGGGCGGATGGCGATCTGGCTGCTAGAGGTTCGTGCCGGCGTTTACGTAGGCAACTACAACCGCAAAGTCCGAGAATATCTATGGCAACAAGTGGAAGAGGGGTTGGATGATGGCAACGCGGTGATGGCTTGGCAGGCTGCTAATGAAGCAGGTTTTGATTTTGTCACGCTGGGGACCAACCGCCGCATGCCAGCCGAGTTTGACGGTGCCAAGCTGGTGTCTTTCCTTCCGCCTTTGCAAATCGGTGATGTAGGCGAATAACGCCGTTCACGGCGTGATGGGACCGGGTTCGTTCTTTAAAAATTGGTAAGTTTCGGAGTGTCGTTTTTGTTCTGTAAAATCAGTTGGTTACAGTTGGT # Right flank : GACTCCCATTTACCGTCGGCGCAGGCCTTCAAGGCTGCTTTGCCGGGCGGTTACACGCGAGCTTGACGGCAGCCTCGTTAGTCGGGGGGCGACTGCTCTAGCCTTGCGGTGGCAGGCCTCTTCGTTGTGCGAGGCGCATTGGAGTCTCATTGCGCCAAGCAAGATCAGAAATCACTGACACATACGCGGTGCCATTGGCGTTTGCGTTCTATGTTGCTCGGTCATCTGGCATTTCTCACCGCTACGCACGGAGTTGCAACTGACAGACACCGGTACGTGCCAGGGCATCGAGATGTCCGCAGGACAGTTCTGGCTACTCGCGGAGCATCCTAGCCGGCTCATTGGAGCTGTGCCTTCAAAACGCGGCGGCGGTGACGGCCGGCAGTGACGCCGGCCGATTTACGTAAGCTCTCAGCTCCAATCGTCCATGTCGTGCTTGATCGTATGGCGGTTCGCGATCAGCGTTTCGACGCTCGGCTCGTTGTTCATGGCGCGCTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //