Array 1 14217-12296 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZY01000005.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2766 NODE_5_length_115892_cov_3.80826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14216 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 14155 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 14094 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 14033 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 13972 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 13911 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 13850 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 13789 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 13728 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 13667 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 13606 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 13545 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 13484 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 13423 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 13362 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 13301 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 13240 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 13179 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 13118 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 13057 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 12996 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 12935 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 12874 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 12813 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 12752 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 12691 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 12630 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 12569 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 12508 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 12447 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 12386 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 12325 29 93.1 0 A...........T................ | A [12298] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32259-30828 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZY01000005.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2766 NODE_5_length_115892_cov_3.80826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32258 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 32197 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 32136 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 32075 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 32014 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 31953 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 31892 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 31831 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 31770 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 31709 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 31648 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 31587 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 31526 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 31465 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 31404 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 31343 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 31282 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 31221 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 31160 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 31099 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 31038 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 30977 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 30916 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 30855 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //