Array 1 298589-297420 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHMC01000002.1 Pectobacterium carotovorum subsp. carotovorum strain ATCC 39048 NODE_2_length_468735_cov_61.6406_ID_2355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 298588 28 100.0 32 ............................ GTTGATTTGTAGTCGATGATATCACCTCCCTT 298528 28 100.0 33 ............................ AGCCATTAACCGTTTTATCCGGCCGCACCCGAT 298467 28 100.0 32 ............................ ATCACTAACAATGCTGACGTCGAACAACTGAA 298407 28 100.0 32 ............................ AATAAATCATTCTTTGATGCTGGTCAGGAAGC 298347 28 100.0 32 ............................ ATACAGGGAGCGGCGACGAACTCAACCAGAGT 298287 28 100.0 32 ............................ AAGAAAAAGTAATGGCAGGGCTTGCTAAAGTT 298227 28 100.0 32 ............................ AAGCAGCATTGGGGTCATGCACTTCATGGGCT 298167 28 100.0 32 ............................ TATCTCAGGGTAAGTACGAAGTTACGGTAGAT 298107 28 100.0 32 ............................ TCAACGGCCTGAAAAACTCATGGCCACAAATT 298047 28 100.0 32 ............................ ATAGTGTGTATGACGCCCACAAAAAAGCCGCT 297987 28 96.4 32 ...........C................ GAGGAGAAAACTAACTCCGCCTGGAAGAACTT 297927 28 96.4 32 ...........C................ TTATTGAGATGGCTGTTTCACAGAACGCAGAT 297867 28 96.4 32 ...........C................ AGATGCATTGAGAACTTGCTTAGGTGTCGCCA 297807 28 96.4 32 ...........C................ TCTCGATACCACATATGGCCAGCAGCGTAACC 297747 28 96.4 32 ...........C................ TCCACGTTCTCCATCATCAGCACGCGTGGACG 297687 28 96.4 32 ...........C................ AATAAACATTACTAAGGAGCCTAGCGATGAAA 297627 28 92.9 32 ...........C.....T.......... TGCCACCGGACCAGATGAAGGGGACCGCCAGT 297567 28 89.3 32 ........T..C............A... CGTGGGGTGCCACTTTGTTTGATGCTCCAGAC 297507 28 92.9 32 ...............A....T....... AGGGCGCGTGGGTGCGACTGGAAGATAAAAAG 297447 28 82.1 0 .............C........CG.CG. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 96.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGTTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : TTATCGGGATGCGTCGCTGGCGCAACGCATTTTAGAGGCTTATTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCGAGCAGGCTACCTTTTAAGTGCGCGGGCATGTCGTCGCTGCCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGACGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCGCCAGTATTTCATCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATTGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 303031-305100 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHMC01000002.1 Pectobacterium carotovorum subsp. carotovorum strain ATCC 39048 NODE_2_length_468735_cov_61.6406_ID_2355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 303031 28 100.0 32 ............................ TACCGCTCCAGTTGCCAGATCACCAGCAAGAG 303091 28 100.0 32 ............................ GCACAGGAAAACGCAGTGCTTGATCGCGTAGC 303151 28 100.0 32 ............................ AACGCTTTCAATGCTGCCGGGTCATTCATTGC 303211 28 100.0 32 ............................ GCTCAGAAGCCGATAAGAAGCGCGATGAAATT 303271 28 100.0 32 ............................ TTATGCTTTCACGTATGCGTTGACGATAACGA 303331 28 100.0 32 ............................ CGGAAGACGACTATGTGTTTACCGTCATCGCG 303391 28 100.0 32 ............................ GCATCGTAATTACGGCGGCTATTGAGGATGTA 303451 28 100.0 32 ............................ AGCAAATGCGAGAGGTAATCCACGCAAACAGC 303511 28 100.0 32 ............................ TGCATACATCGAGCGAATCAAACAGGCAGATG 303571 28 100.0 32 ............................ AGAACGTTGTTTCTGTCGTGCATCTACCTGGC 303631 28 100.0 32 ............................ AATTTTACAGAAACAGCGGCTGACCACCGTAT 303691 28 100.0 32 ............................ AAACGACTACAGCAGTTCTCTCGCAGTTATCA 303751 28 100.0 32 ............................ CATTCTACGTCAACACATTTATGATAAAATAA 303811 28 100.0 32 ............................ AATAATGGGCAGGAAATCTTCACGAAGGTGGA 303871 28 100.0 32 ............................ GTAACATGCCGATTGACACATTCATGTCGTGC 303931 28 100.0 32 ............................ GTGGTGAGTGGGTTGTGCCCCAGGCAGTTGTC 303991 28 100.0 32 ............................ AGAACGTTGTTTCTGTCGTGCATCTACCTGGC 304051 28 100.0 32 ............................ AATTTTACAGAAACAGCGGCTGACCACCGTAT 304111 28 100.0 32 ............................ AAACGACTACAGCAGTTCTCTCGCAGTTATCA 304171 28 100.0 32 ............................ CATTCTACGTCAACACATTTATGATAAAATAA 304231 28 100.0 32 ............................ AATAATGGGCAGGAAATCTTCACGAAGGTGGA 304291 28 100.0 32 ............................ GTAACATGCCGATTGACACATTCATGTCGTGC 304351 28 100.0 32 ............................ GTGGTGAGTGGGTTGTGCCCCAGGCAGTTGTC 304411 28 100.0 32 ............................ GTCTGCGTCGGGATATGTCGCCTCGTTAGAGA 304471 28 100.0 32 ............................ CGCAAAATAACGAGCCTGTGCTCGAAGCTGCC 304531 28 100.0 32 ............................ GCAAGTCATGCGCCCGTGATTGGGCTGGGGCA 304591 28 100.0 32 ............................ GTCAATCTCAAATCCTGCGCGGTCATCATAGA 304651 28 100.0 33 ............................ CTTACCCGTTCCATTAAAGATGCGTGTAACCGC 304712 28 100.0 33 ............................ TGCTCACCAAGTTTTGCCTGAGAATTTCCCTGA 304773 28 100.0 32 ............................ GGTCTTGGCTACCTCGCCGATGATTTGCCCCA 304833 28 96.4 32 ...........G................ ATGAGGCTCGAAACCGTCGACCGCTGCGGTTT 304893 28 96.4 32 ...........G................ TCGTTCTAACTTATTGATATACGCTTTTAGTT 304953 28 100.0 32 ............................ GTGCATTGGGGCTTGGTGCCATTTCAATCGGG 305013 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 305073 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAGGCTCAAGTGCCTGACCTGCGTGGATGACTTCACGAAGGAGTGCCTGACGGTCACCGTTGCCTTCGGGATTTCAGGCGTGCAGGTCACGCGTATTCTGGACAGCATTGCGCTGTTTCGCGGCTATCCGGCTACGATAAGAACCGATCAGGGCCCGGAGTTTACCTGCCGCGCGCTCGATCAATGGGCCTTTGAGCATGGCGTGGAGCTGCGGCTTATTCAGCCCGGCAAGCCGACACAGAACGGATTTATTGAGAGTTTTAACGGGCGCTTTCGCGATGAATGCCTGAATGAACACTGGTTCAGCGATATTCTTCATGCCCGGAAAACGATTAATGACTGGCGGCAGGATTATAACGAGTGCCGTCCCCATTCATCGCTGGATTACCAGACACCAGCTGAATTCGCAACGGACTGGCGAAACAGGAAATATGAAGAAAAACCAACCGACATTACTAACTGAAGGTCGTATCTAATCCTGGGGGCAGGTCAGTGCAGGT # Right flank : ACGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACCCCGAATCCCAATCAATCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //