Array 1 10926-4075 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBJ01000002.1 Carnobacterium iners strain LMG26642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 10925 36 97.2 30 ............T....................... CCCCACCATCTACTACCAGCAAGAGTTGAT 10859 36 100.0 30 .................................... TACCTAACGTACCGTCTGGAGATATTCCGA 10793 36 100.0 30 .................................... TATCTTTGTAGACTTGTTCGCTACCACTAA 10727 36 100.0 29 .................................... AAGTGATTGTGTTTGACGGTTTAAAAGAA 10662 36 100.0 29 .................................... ATCAAGGTGTGGTAATAGAAAACCCGTTA 10597 36 100.0 31 .................................... CCAGACGTTCGCATGATTGTTCAGAAAAGAA 10530 36 100.0 30 .................................... TGGACGTACCGCCTCAACTTAATAAGTTTA 10464 36 100.0 30 .................................... GTCAGATAGCAGAAAATCGGAACAGATGAT 10398 36 100.0 30 .................................... TATATCCGTTTTAGATCAAGCCGAAAAAAC 10332 36 100.0 30 .................................... TAATCAATAAAATAGCTTTAGGTGGTCACT 10266 36 100.0 30 .................................... ATAATCCAGAAAGAAAAATGCAATTAAGAC 10200 36 100.0 30 .................................... CCAATCCAATTCAAAGTTAATCTCGTCCCA 10134 36 100.0 30 .................................... ACACTGGGGATCAATCGTTGTTATGGGAGA 10068 36 100.0 30 .................................... AACCTTGTTCAACGTTTTCATCTGCAACAA 10002 36 100.0 30 .................................... TGCTATTATATGCACGATCAAAGTATAAAA 9936 36 100.0 30 .................................... CAGGAGCCCTTCCTACAGGGCTACCTAGAG 9870 36 100.0 30 .................................... CAACGTTATCAAAAGCACAATTTGAAGATG 9804 36 100.0 30 .................................... AGCACAAAGCTGGAATATGATAGCAATCGA 9738 36 100.0 30 .................................... AATGCTTCGTTTTTTAATTCAAACATAACT 9672 36 100.0 30 .................................... CCTAAGGTAAGCTTTCCCCATCGGGGTGGT 9606 36 100.0 30 .................................... AATCAAATACGTTACTAAACAGATGAATGA 9540 36 100.0 30 .................................... ATTAAGAAACCGAAAGCATCTTTCAATCCA 9474 36 100.0 30 .................................... GGATTGAATTGGATTTAAATCAATTACTTA 9408 36 100.0 30 .................................... CTGCAGACTTGACCGCCATACCAACAAGTG 9342 36 100.0 30 .................................... TGAAGTAGTAGAGTTAGGAAGCAACAAAAA 9276 36 100.0 30 .................................... AGGAATCGAAACAATCAAAGAGTTACAACG 9210 36 100.0 31 .................................... CCACGTTATCAAAAGCACAATTTGAAGATGT 9143 36 100.0 30 .................................... TACGCTAAGTTCCATCTTCATTCCTTTATT 9077 36 100.0 30 .................................... TAAGGGTGGGTTTAGGCATTGTTTTAAGAT 9011 36 100.0 30 .................................... ACGCCACTTTTGTTAATGCTATTAAACAGA 8945 36 100.0 30 .................................... ACGTATCACCTTTCGCCTTATTTACCTTTA 8879 36 100.0 30 .................................... TGGTGGAAACAAAAAAATGTTTATCATCGT 8813 36 100.0 31 .................................... CGAACTACGAAGAAGAAAAAAAATAAGTATA 8746 36 100.0 30 .................................... AATGCTAAGTCTCAAACTGATTTAAAAGGT 8680 36 100.0 30 .................................... CTTTTACAGTATTAGACAAGGAGACAATGA 8614 36 100.0 30 .................................... ACCTAAGATCTTCGGAGTTGAGACTATCAA 8548 36 100.0 30 .................................... AACATATACAAAGGCAACTCAATTTAATTG 8482 36 100.0 30 .................................... TACACTAGATGATTTAGACCACCTAGAAAC 8416 36 100.0 30 .................................... GTATTAGGATAACCAAAAGCCTCCATTAAG 8350 36 100.0 30 .................................... GCAATACAACAAAAATGAAGACATGAATGA 8284 36 100.0 30 .................................... CCACCCATTGCCATGAATATAACTTCTTCT 8218 36 100.0 30 .................................... CTTATAGTAAAACAATGCCTTCTCGAATAT 8152 36 100.0 30 .................................... CTTATAGTAAAACAATGCCTTCTCGAATAT 8086 36 100.0 30 .................................... GCCTGTATAGATAAGCCTAGAACATCAGCT 8020 36 100.0 30 .................................... CATTGGCTGAAGATGTTAAGTTGCAAAGAT 7954 36 100.0 30 .................................... ATCAACAGCAGAAAAGAGTATTCTCATACT 7888 36 100.0 30 .................................... ACGGGCTTGATAAAACTTACAAAGAAAGAG 7822 36 100.0 30 .................................... CACACTTATGCTGTTTTGCCTATACCTAAG 7756 36 100.0 30 .................................... ACATTTAAACGCTAAACCTGTTGTAAAAAT 7690 36 100.0 31 .................................... AATACAGTAAAATGATTGGATAGTATTTTTG 7623 36 100.0 31 .................................... GGATATGAAATCAATGACGATAACAGAAAAG 7556 36 100.0 30 .................................... ATATCAACACTCCTTATCCGTTATGATTAT 7490 36 100.0 31 .................................... CGAGTAATAGGTCTCGTTGCTACTGCTTTAG 7423 36 100.0 32 .................................... TTAGATCCGTTAACAAAAGTAGTCGGACTACT 7355 36 100.0 31 .................................... ATATGAGAGTGTCGGGTCTATATTAAAATCG 7288 36 100.0 30 .................................... AGAGTTAACAAATCACCAATGAAGATAACT 7222 36 100.0 30 .................................... AAGGTTAACTCTAGTAAACATGCTATCATT 7156 36 100.0 30 .................................... ACTTTAAAAATAAATCAATGGTCAATCCGA 7090 36 100.0 30 .................................... CCATTGAAAGCTAAACAGATTGAAAAGATT 7024 36 100.0 30 .................................... AGAACAAACAAAAAAAAGTTTGATGTTAAA 6958 36 100.0 30 .................................... GATGTTTTTAAATTATCAGAAATGATTGAT 6892 36 100.0 30 .................................... GATGTAGTAATTGATTATATAACTTCAGAA 6826 36 100.0 31 .................................... ACTAATTAAACTCAATCAAGAATGTAAGGTG 6759 36 100.0 29 .................................... AACTGAACAAGAAAAGCTATATTATATTA 6694 36 100.0 29 .................................... TGTTTGGCATTTTAAACAGTACAATGACA 6629 36 100.0 30 .................................... ACTGACTGTCCTGTATCTTGTGCAACCTTA 6563 36 100.0 30 .................................... CCATCGCCGAGGCTAACGGGGTAGGCATGG 6497 36 100.0 30 .................................... CTATTGAACTTCAAATCGAGCTGTTGAATC 6431 36 100.0 30 .................................... CGTATCTGCCTCTAGGCATTTTGACAACCA 6365 36 100.0 32 .................................... TATAAGTAAATATTTTCTATCACAACCACACG 6297 36 100.0 30 .................................... AGTAGCCTGAAGAAAACAAGTTAAATACTT 6231 36 100.0 30 .................................... ACAGTTGAAGGAACTTATGACGCATTAGAT 6165 36 100.0 30 .................................... CTTTATTTGTGGATAACGCTATCCTTTTTT 6099 36 100.0 29 .................................... ACTCCTGCATACATTAAACCTGCAGCAAA 6034 36 100.0 30 .................................... CGTTCAATATTTGTTAGTTTCTTCTCGAAA 5968 36 100.0 30 .................................... AGGGGCTGGAATGACAGACAATCAACCATC 5902 36 100.0 30 .................................... GGTTCATGGTTAACAGTTGACCGTACACTG 5836 36 100.0 30 .................................... TCCTCTTGTATACCAAGTGAGACTATAATT 5770 36 100.0 31 .................................... AAAGGAGTGACTTTAGGTTTTCTTTTTGCTA 5703 36 100.0 30 .................................... AGGATGCTGTTACTGTTTTATCTTTTGACC 5637 36 100.0 30 .................................... GACATAGTATCTATTTTTATACCAGAATTA 5571 36 100.0 30 .................................... CGTCTTTTCTCAAAATAATTGAATGAGCTT 5505 36 100.0 30 .................................... GGTCCAGAAAACCTACCTATGGAACCAATG 5439 36 100.0 31 .................................... AGATTAAATATTTTGACGGAATGGCATACCG 5372 36 100.0 30 .................................... ACATGGAATATGATATTAAAACATATAGAG 5306 36 100.0 30 .................................... CATTATTGTAGTATAAGTACTTTGGGTTTG 5240 36 100.0 30 .................................... CAGTTGCTTTTGAGATAGCATAAGTAGAAA 5174 36 100.0 30 .................................... AATTTTTGAAACTGCCTAGCTCCATGTTCG 5108 36 100.0 30 .................................... GGTACTTGACAGGAATGAAGAAGGTGAACC 5042 36 100.0 30 .................................... AAGTTATTCCGTTTAGAAACGCCACCATAA 4976 36 100.0 30 .................................... AGATACAAGTGACGCATTAAGCAGACACGT 4910 36 100.0 30 .................................... TATCAGCTAAAAAGCTAAGAGATAAATATG 4844 36 100.0 30 .................................... CAATCATACCGTTTAGTGGCGCTTTAGCTA 4778 36 100.0 30 .................................... GGGTCACCATATTGAATTACTTCAAGAGGA 4712 36 100.0 30 .................................... AGCAGTACAAGAATTGATGACTCACGATGA 4646 36 100.0 30 .................................... CACTTAGTATACGTTTACCTGCACTAGCAA 4580 36 100.0 30 .................................... GTTACCGACTACCATTTGATATTGAAAACG 4514 36 100.0 30 .................................... GTGACTAGTTGTTTTTTGTAAATCAATCTT 4448 36 100.0 30 .................................... AATAAGTTGCTACAATCCGAAACAGGTGAG 4382 36 100.0 30 .................................... TCCTTTTGAAGCATTTTGACTTCATCTACT 4316 36 100.0 30 .................................... GATGTAAGTGTAGAATAGTAAAACAAATAA 4250 36 100.0 30 .................................... GGATTATGGTGGTCGTGGCATTAGTTACTG 4184 36 100.0 38 .................................... CAATGGTGGAAACACTAGTTATCAAAGAGTCCTTATCT 4110 36 86.1 0 ..AC.AAA............................ | ========== ====== ====== ====== ==================================== ====================================== ================== 104 36 99.8 30 GTTTCCTTATACCAAAAGATGCGAGAGTACCAAAAT # Left flank : TGAATTATTCAGGATACATTTGATTTATTAGGAATATGGGGGTGCAATAATTATATAGAAGATATCTATGTTTACTTACAAATCTATAAAAAACAGATAAGAAACACATTAATAGGTGGGGACTTTAATAGTAACGCCATCTGGGATGAAAAATATAAACGACGAACTCATTCAGGGGTTGTAGATGAACTGGCATCTATTGGTTTGGTAAGTACTTACCATTCCTTAACAGATACTGTCGCTGGATCAGAAAAATATGCGACATATTATATGTATCGTCATAGTCATCGACCTTATCATATTGATTATTTTTTTTGTAAGAGAGAATGGGTAGACAACCTGACTATTGGTATTTATAAAGATTGGATTTTGCATAGTGATCATATGCCTATTTTTTTAGAGATAGACCGTGAGAATAGGGTTAAAGAAGAGATGGAAAGTGTAGACTGAAAAATAGAATTTTATTGAAATTTAGACTTAACGAATTTATAAAAGATGAA # Right flank : ACCAATTTAATTATACCTTATCTTGTATTAAATTTTCAAAATATTTTTTTATATTGGCTGTAACTGCAGTTAGATCAACTATTACAGGAGTATTGGTAAGAATAAAAAGTGAGTAAACATAGATAAAAATAGATAAGTTATCCACAGTTTTTAAAGATAAAAGAACGGTTTCTTGCGCGTACTTATCCACAAGTATCATATACCAATTACAAGCATGTTGAAATGTTTCTTCAGACCAACTAGAAGGAATTTTTGAGATTAATTGATCTTTAACAGCATAACAAATAGTTTTATTTCTTATTTTTCTTTGTAAACAATATTGGTAGGAAAAAGAGAAGGATTTTCTGTTTGAATAAAATAGAGAATCCCATTAGGAGACTGTTGAAGGTAATAAATAAAATGTTCTAATTCCTTATCTGAAAGCACCACTTCAGGAAATTGTATATAGATAATTAATTTTTTATCACTTATTGATTCTTCTAATACATTAATTTGAAGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTTATACCAAAAGATGCGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 962121-958259 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBJ01000002.1 Carnobacterium iners strain LMG26642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 962120 36 97.2 29 ......................A............. ACATAAGTCTTATCTCTTTTGTTTTCGTA 962055 36 100.0 30 .................................... CCTGCCCTTGCTGTTGACTGCCTTGTTCAC 961989 36 100.0 30 .................................... ACGAAATTAAAACCAATGCAAGTAATCAAA 961923 36 100.0 30 .................................... TCAGGAGTCGTGATGTAATTCGTAACATTT 961857 36 100.0 30 .................................... CACCAAAACCGCGTCACTTCTAACAGCTCG 961791 36 97.2 30 ......................A............. TTTTCCTGATTTTACGATTAGTTTCTTCTT 961725 36 100.0 30 .................................... TCCCCTTTTATATATATTAGTTCTTGCGAA 961659 36 100.0 31 .................................... AACGGATGAAGACAGGCGAAGACTATCAAGA 961592 36 100.0 30 .................................... CTTTTTTCTTTGCAACGTTCCTGCGTTGCG 961526 36 100.0 30 .................................... ATAATTCTTTTTAAATCAAACGTTTGTATC 961460 36 100.0 29 .................................... ATAAAAAAAGACCACCAGTTTCCGCTGGC 961395 36 100.0 30 .................................... AATCTGGAGTAGTATAGATCACGTTAACCA 961329 36 100.0 31 .................................... CAACACTTATCAGCAATGAAGCGTCCGTTTC 961262 36 100.0 30 .................................... CGCACCTTTTAAATTAGTAACTATTCGTTG 961196 36 100.0 30 .................................... ATTATTGTTATTCATTACTCGTCATCCTCC 961130 36 100.0 30 .................................... TCTTTCACTTCTTTAATGTGATGCACCATG 961064 36 100.0 30 .................................... CTATCACGAACCGCACTGGTTGATTTATTG 960998 36 100.0 30 .................................... TAATAAAAAATACTACCAATTCAGACAGCG 960932 36 100.0 30 .................................... TAATGCTGTATTTGTATTCATATTCTTATC 960866 36 100.0 30 .................................... TACTTGACTGCTTTCATGTAAGGTCTGGCA 960800 36 100.0 30 .................................... AGAAGACATCTCACCAGACACCAAAACACC 960734 36 100.0 30 .................................... ATGGGAGTTAAAGTTAAATCTGACTTTTCG 960668 36 100.0 30 .................................... ATTGAAAGCATAGATGACTTATACAGTTAC 960602 36 100.0 30 .................................... TACAACAGGAATCGCAACAAACGCTTCTGG 960536 36 100.0 30 .................................... CCTGCATGAAAAGCGACACAGGAGCGTTCG 960470 36 100.0 30 .................................... ACATACGCACCTTTTTTCATCGCTTCAACC 960404 36 100.0 30 .................................... GAAGAAAGAACAATTATAAATAAATTAAGA 960338 36 100.0 30 .................................... TATCCATTTGTTTTAGCGATAGTAATTCCT 960272 36 100.0 29 .................................... CAATAAACTCTGCTGCCTGCTCTTGAGTG 960207 36 100.0 30 .................................... AAACCTATTAAGGAACATGACCACGCTATG 960141 36 100.0 30 .................................... ATTGAAATGGAATTTACTCAAAATGGTCTA 960075 36 100.0 30 .................................... CCTTTTTCTTCTTTTTTATCAGTCCTGTTA 960009 36 100.0 30 .................................... TGTTCGTAGCTACTTGGAATCCAATCCAGA 959943 36 100.0 30 .................................... AAGTTAGAAGGAAAATACTATTGGAAACAT 959877 36 100.0 30 .................................... AATCAAAGTGTTTGCGCTTCATTGCTTCGT 959811 36 100.0 30 .................................... TGGGAATCCGGCAGGTACACTCCCAAAGCA 959745 36 100.0 30 .................................... AGTTTAATGTCTATTAGTGACATTCAATCA 959679 36 100.0 30 .................................... GTATTGGTTTTGCTAGGAGATAAAGAGGTC 959613 36 100.0 30 .................................... CAATATATTGTGTTCCGCTTGCACCATTTG 959547 36 100.0 30 .................................... ATTGTTGCAGATGATTATGAAGTAGAAGAA 959481 36 100.0 30 .................................... AACTCTGACGTTTTATTGTCAGCTATTCTA 959415 36 100.0 30 .................................... GCATCAATAAGATTGGAGTCATTAGATTCA 959349 36 100.0 30 .................................... CTGCTATAAGTGACAGTTGTCTCACTTAAA 959283 36 100.0 30 .................................... CATTGCAGAAAATCTGCTTCTGGTTGTCCA 959217 36 100.0 30 .................................... ATAGCAGGTTCTTGTGATTTCGAACGAGGA 959151 36 100.0 30 .................................... GCTTCACTGGAGCTGGTGCTGGCGTTGGAG 959085 36 100.0 30 .................................... ACCTTACCGAAGTTATGCGCTGCACGATGG 959019 36 100.0 30 .................................... TTATTAAAATAGCTACAAACAATAGAAGTA 958953 36 100.0 30 .................................... TTGCCTGTTGAAGGATTGAACACTGGTGGT 958887 36 100.0 30 .................................... TACGCCATTATCGAAAAAGAAGATGGTGAG 958821 36 100.0 30 .................................... TTACTACCGGGACACTAACAGGAGCAAACT 958755 36 100.0 30 .................................... AAAATAAGATTGTTAAAGACATTATGGTTT 958689 36 100.0 30 .................................... AGTCTTTCTCTTGGTGCTTAACGAACTCAT 958623 36 100.0 30 .................................... TCGTGACTGCTACAGAACAGGGAGAAGAAT 958557 36 100.0 30 .................................... TGGCTATATCTTTCAATGTCATTCCCTCAA 958491 36 100.0 29 .................................... TAAGATTGAACATCATTTTTTCGTCAGTT 958426 36 100.0 30 .................................... TCCAAGTAGCTAATTCTAAATAACCTGTAA 958360 36 100.0 30 .................................... ATCGGATTGAGATTAACTTCAGCACAAGTT 958294 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 59 36 99.9 30 GCTATACGTTCCTTACAAAATCGGCTAAAATAAAAT # Left flank : AGTAAACTGAACTTTACTACATAAACGTATGAGAGTGAGGTATGCAAGTATACGATGAAACAAACACTAAAATAAATGAAATGAATTCCCAAGATAAAATGGTTAATGGATCGGCTTGGATGACAGGCGGTAGCATCCTATCGCGAGTAGTAGGTGTTCTCTATATTATTCGGATAGTCATTAATGGAGAAGTCGTTGATGCTGTGTCAGCGTCAACTTTTGGTGCTTTTGTTAGGGCACTATTTAGTGCTTTATATTTACTCTTTGTGATTTGGAGAAAAAAATCTTAAATGGACAGGAACCTTGCCATGAGTAAAAAGAACAGTACTGTTTCAACTAATGATATTTTAAAATCCATTATTAAAACAGCCGTTCCTTTTATTATCATAGGATCAGGGATTACACTCTATCAATTAATTGATCAATTCACGTTTAATCCCATGATAAGAGCCGTTACAAACATGACAACTAAGCAAATTATCATTCATTATGCGATTGTT # Right flank : AGGTACAACAAATAACCCATAAGCAGTATAGGCCTAAGGGTTATTTGTTGTGTCTAAAAAACGGTCAAATTATCAGATTTCACCTTCTCCTCATTGGGTAAAGGGTCTCCTACAAGTAATCTCATTTCACTAAATTGTTTTTCTGTCAAGGTTAACATGCGTACAGAACCTTTTTCTGGGACATGATTTTCTATTTGATAACTAAATTTCTTTGCCATATCATATCCGTTACAGATTCGATAATAAATTGAATATTGCAACATAACATAGCCTTCATTTAAAAGATATTTCCGAAATTTTGTCGCAGTTCTTCGCTCTCTTTTAGTTACTACTGGTAAATCAAACATGACTAATACTCTCATAAATCTACTCATACTCATGTTGTTTCAATGTTATTAGTTTTGGTAATTTCAAAAACTTTGTAGAATTCACTCGGCAACAGCTTGAGAACGAAGAAACTGTTTTCCGAATAGCGTTTGTCAATGAACGATACTCGTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATACGTTCCTTACAAAATCGGCTAAAATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GCTATACGTTCCTTACAAAATCGGCTAAAATAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2503270-2509882 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBJ01000002.1 Carnobacterium iners strain LMG26642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 2503270 36 86.1 38 ............................TTT.GT.. AGATAAGGACTCTTTGATAACTAGTGTTTCCACCATTG 2503344 36 100.0 30 .................................... CAGTAACTAATGCCACGACCACCATAATCC 2503410 36 100.0 30 .................................... TTATTTGTTTTACTATTCTACACTTACATC 2503476 36 100.0 30 .................................... AGTAGATGAAGTCAAAATGCTTCAAAAGGA 2503542 36 100.0 30 .................................... CTCACCTGTTTCGGATTGTAGCAACTTATT 2503608 36 100.0 30 .................................... AAGATTGATTTACAAAAAACAACTAGTCAC 2503674 36 100.0 30 .................................... CGTTTTCAATATCAAATGGTAGTCGGTAAC 2503740 36 100.0 30 .................................... TTGCTAGTGCAGGTAAACGTATACTAAGTG 2503806 36 100.0 30 .................................... TCATCGTGAGTCATCAATTCTTGTACTGCT 2503872 36 100.0 30 .................................... TCCTCTTGAAGTAATTCAATATGGTGACCC 2503938 36 100.0 30 .................................... TAGCTAAAGCGCCACTAAACGGTATGATTG 2504004 36 100.0 30 .................................... CATATTTATCTCTTAGCTTTTTAGCTGATA 2504070 36 100.0 30 .................................... ACGTGTCTGCTTAATGCGTCACTTGTATCT 2504136 36 100.0 30 .................................... TTATGGTGGCGTTTCTAAACGGAATAACTT 2504202 36 100.0 30 .................................... GGTTCACCTTCTTCATTCCTGTCAAGTACC 2504268 36 100.0 30 .................................... CGAACATGGAGCTAGGCAGTTTCAAAAATT 2504334 36 100.0 30 .................................... TTTCTACTTATGCTATCTCAAAAGCAACTG 2504400 36 100.0 30 .................................... CAAACCCAAAGTACTTATACTACAATAATG 2504466 36 100.0 30 .................................... CTCTATATGTTTTAATATCATATTCCATGT 2504532 36 100.0 31 .................................... CGGTATGCCATTCCGTCAAAATATTTAATCT 2504599 36 100.0 30 .................................... CATTGGTTCCATAGGTAGGTTTTCTGGACC 2504665 36 100.0 30 .................................... AAGCTCATTCAATTATTTTGAGAAAAGACG 2504731 36 100.0 30 .................................... TAATTCTGGTATAAAAATAGATACTATGTC 2504797 36 100.0 30 .................................... GGTCAAAAGATAAAACAGTAACAGCATCCT 2504863 36 100.0 31 .................................... TAGCAAAAAGAAAACCTAAAGTCACTCCTTT 2504930 36 100.0 30 .................................... AATTATAGTCTCACTTGGTATACAAGAGGA 2504996 36 100.0 30 .................................... CAGTGTACGGTCAACTGTTAACCATGAACC 2505062 36 100.0 30 .................................... GATGGTTGATTGTCTGTCATTCCAGCCCCT 2505128 36 100.0 30 .................................... TTTCGAGAAGAAACTAACAAATATTGAACG 2505194 36 100.0 29 .................................... TTTGCTGCAGGTTTAATGTATGCAGGAGT 2505259 36 100.0 30 .................................... AAAAAAGGATAGCGTTATCCACAAATAAAG 2505325 36 100.0 30 .................................... ATCTAATGCGTCATAAGTTCCTTCAACTGT 2505391 36 100.0 30 .................................... AAGTATTTAACTTGTTTTCTTCAGGCTACT 2505457 36 100.0 32 .................................... CGTGTGGTTGTGATAGAAAATATTTACTTATA 2505525 36 100.0 30 .................................... TGGTTGTCAAAATGCCTAGAGGCAGATACG 2505591 36 100.0 30 .................................... GATTCAACAGCTCGATTTGAAGTTCAATAG 2505657 36 100.0 30 .................................... CCATGCCTACCCCGTTAGCCTCGGCGATGG 2505723 36 100.0 30 .................................... TAAGGTTGCACAAGATACAGGACAGTCAGT 2505789 36 100.0 29 .................................... TGTCATTGTACTGTTTAAAATGCCAAACA 2505854 36 100.0 29 .................................... TAATATAATATAGCTTTTCTTGTTCAGTT 2505919 36 100.0 31 .................................... CACCTTACATTCTTGATTGAGTTTAATTAGT 2505986 36 100.0 30 .................................... TTCTGAAGTTATATAATCAATTACTACATC 2506052 36 100.0 30 .................................... ATCAATCATTTCTGATAATTTAAAAACATC 2506118 36 100.0 30 .................................... TTTAACATCAAACTTTTTTTTGTTTGTTCT 2506184 36 100.0 30 .................................... AATCTTTTCAATCTGTTTAGCTTTCAATGG 2506250 36 100.0 30 .................................... TCGGATTGACCATTGATTTATTTTTAAAGT 2506316 36 100.0 30 .................................... AATGATAGCATGTTTACTAGAGTTAACCTT 2506382 36 100.0 30 .................................... AGTTATCTTCATTGGTGATTTGTTAACTCT 2506448 36 100.0 31 .................................... CGATTTTAATATAGACCCGACACTCTCATAT 2506515 36 100.0 32 .................................... AGTAGTCCGACTACTTTTGTTAACGGATCTAA 2506583 36 100.0 31 .................................... CTAAAGCAGTAGCAACGAGACCTATTACTCG 2506650 36 100.0 30 .................................... ATAATCATAACGGATAAGGAGTGTTGATAT 2506716 36 100.0 31 .................................... CTTTTCTGTTATCGTCATTGATTTCATATCC 2506783 36 100.0 31 .................................... CAAAAATACTATCCAATCATTTTACTGTATT 2506850 36 100.0 30 .................................... ATTTTTACAACAGGTTTAGCGTTTAAATGT 2506916 36 100.0 30 .................................... CTTAGGTATAGGCAAAACAGCATAAGTGTG 2506982 36 100.0 30 .................................... CTCTTTCTTTGTAAGTTTTATCAAGCCCGT 2507048 36 100.0 30 .................................... AGTATGAGAATACTCTTTTCTGCTGTTGAT 2507114 36 100.0 30 .................................... ATCTTTGCAACTTAACATCTTCAGCCAATG 2507180 36 100.0 30 .................................... AGCTGATGTTCTAGGCTTATCTATACAGGC 2507246 36 100.0 30 .................................... ATATTCGAGAAGGCATTGTTTTACTATAAG 2507312 36 100.0 30 .................................... ATATTCGAGAAGGCATTGTTTTACTATAAG 2507378 36 100.0 30 .................................... AGAAGAAGTTATATTCATGGCAATGGGTGG 2507444 36 100.0 30 .................................... TCATTCATGTCTTCATTTTTGTTGTATTGC 2507510 36 100.0 30 .................................... CTTAATGGAGGCTTTTGGTTATCCTAATAC 2507576 36 100.0 30 .................................... GTTTCTAGGTGGTCTAAATCATCTAGTGTA 2507642 36 100.0 30 .................................... CAATTAAATTGAGTTGCCTTTGTATATGTT 2507708 36 100.0 30 .................................... TTGATAGTCTCAACTCCGAAGATCTTAGGT 2507774 36 100.0 30 .................................... TCATTGTCTCCTTGTCTAATACTGTAAAAG 2507840 36 100.0 30 .................................... ACCTTTTAAATCAGTTTGAGACTTAGCATT 2507906 36 100.0 30 .................................... TATACTTATTTTTTTCTTCTTCGTAGTTCG 2507972 36 100.0 30 .................................... ACGATGATAAACATTTTTTTGTTTCCACCA 2508038 36 100.0 30 .................................... TAAAGGTAAATAAGGCGAAAGGTGATACGT 2508104 36 100.0 30 .................................... TCTGTTTAATAGCATTAACAAAAGTGGCGT 2508170 36 100.0 30 .................................... ATCTTAAAACAATGCCTAAACCCACCCTTA 2508236 36 100.0 30 .................................... AATAAAGGAATGAAGATGGAACTTAGCGTA 2508302 36 100.0 31 .................................... ACATCTTCAAATTGTGCTTTTGATAACGTGG 2508369 36 100.0 30 .................................... CGTTGTAACTCTTTGATTGTTTCGATTCCT 2508435 36 100.0 30 .................................... TTTTTGTTGCTTCCTAACTCTACTACTTCA 2508501 36 100.0 30 .................................... CACTTGTTGGTATGGCGGTCAAGTCTGCAG 2508567 36 100.0 30 .................................... TAAGTAATTGATTTAAATCCAATTCAATCC 2508633 36 100.0 30 .................................... TGGATTGAAAGATGCTTTCGGTTTCTTAAT 2508699 36 100.0 30 .................................... TCATTCATCTGTTTAGTAACGTATTTGATT 2508765 36 100.0 30 .................................... ACCACCCCGATGGGGAAAGCTTACCTTAGG 2508831 36 100.0 30 .................................... AGTTATGTTTGAATTAAAAAACGAAGCATT 2508897 36 100.0 30 .................................... TCGATTGCTATCATATTCCAGCTTTGTGCT T [2508907] 2508964 36 100.0 30 .................................... CATCTTCAAATTGTGCTTTTGATAACGTTG 2509030 36 100.0 30 .................................... CTCTAGGTAGCCCTGTAGGAAGGGCTCCTG 2509096 36 100.0 30 .................................... TTTTATACTTTGATCGTGCATATAATAGCA 2509162 36 100.0 30 .................................... TTGTTGCAGATGAAAACGTTGAACAAGGTT 2509228 36 100.0 30 .................................... TCTCCCATAACAACGATTGATCCCCAGTGT 2509294 36 100.0 30 .................................... TGGGACGAGATTAACTTTGAATTGGATTGG 2509360 36 100.0 30 .................................... GTCTTAATTGCATTTTTCTTTCTGGATTAT 2509426 36 97.2 12 ...................................T ATTTTTTGATTA Deletion [2509474] 2509474 36 100.0 28 .................................... GTTTTTTCGGCTTGATCTAAAGGATATA 2509538 36 97.2 41 ...................................A AAATCTGACACTCGGGTATCTCGCTTTTGGTACTCTCGCAT 2509615 35 91.7 19 C........T........-................. TTTTTTCCCACACCTTGAT ATC [2509623] Deletion [2509669] 2509672 36 100.0 82 .................................... TTCTTTTAAGGGTACTCTCTTTTGGTATAAGGAAACTCGAACTCGATATTTTGGTACTCTCGCATCTTTTGTATTCGGGGTA 2509790 36 100.0 21 .................................... TCAACTCTTCTTAGATGGTGG Deletion [2509847] 2509847 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ================================================================================== ================== 100 36 99.7 30 ATTTTGGTACTCTCGCATCTTTTGGTATAAGGAAAC # Left flank : TCTTCAAATTAATGTATTAGAAGAATCAATAAGTGATAAAAAATTAATTATCTATATACAATTTCCTGAAGTGGTGCTTTCAGATAAGGAATTAGAACATTTTATTTATTACCTTCAACAGTCTCCTAATGGGATTCTCTATTTTATTCAAACAGAAAATCCTTCTCTTTTTCCTACCAATATTGTTTACAAAGAAAAAATAAGAAATAAAACTATTTGTTATGCTGTTAAAGATCAATTAATCTCAAAAATTCCTTCTAGTTGGTCTGAAGAAACATTTCAACATGCTTGTAATTGGTATATGATACTTGTGGATAAGTACGCGCAAGAAACCGTTCTTTTATCTTTAAAAACTGTGGATAACTTATCTATTTTTATCTATGTTTACTCACTTTTTATTCTTACCAATACTCCTGTAATAGTTGATCTAACTGCAGTTACAGCCAATATAAAAAAATATTTTGAAAATTTAATACAAGATAAGGTATAATTAAATTGGT # Right flank : CTTCATCTTTTATAAATTCGTTAAGTCTAATTTCAATAAAATTCTATTTTTCAGTCTACACTTTCCATCTCTTCTTTAACCCTATTCTCACGGTCTATCTCTAAAAAAATAGGCATATGATCACTATGCAAAATCCAATCTTTATAAATACCAATAGTCAGGTTGTCTACCCATTCTCTCTTACAAAAAAAATAATCAATATGATAAGGTCGATGACTATGACGATACATATAATATGTCGCATATTTTTCTGATCCAGCGACAGTATCTGTTAAGGAATGGTAAGTACTTACCAAACCAATAGATGCCAGTTCATCACCCCTGAATGAGTTCGTCGTTTATATTTTTCATCCCAGATGGCGTTACTATTAAAGTCCCCACCTATTAATGTGTTTCTTATCTGTTTTTATAGATTTGTAAGTAAACATAGATCTTCTATATAATTATTGCACCCCCATATTCCTAATAAATCAAATGTATCCTGAATAATTCATAGCTTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCGCATCTTTTGGTATAAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //