Array 1 16809-12217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWUW010000019.1 Acinetobacter baumannii strain 15A1042 ctg_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16808 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 16748 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 16688 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 16628 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 16568 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 16508 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 16448 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 16388 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 16328 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 16268 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 16208 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 16148 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 16088 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 16028 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 15968 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 15908 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 15848 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 15788 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 15728 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 15668 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 15608 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 15548 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 15488 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 15428 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 15368 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 15308 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 15248 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 15188 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 15128 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 15068 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 15008 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 14948 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 14888 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 14828 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 14768 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 14708 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 14648 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 14588 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 14528 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 14468 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 14408 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 14348 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 14288 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 14228 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 14168 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 14108 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 14048 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 13988 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 13928 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 13868 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 13808 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 13748 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 13688 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 13628 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 13568 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 13508 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 13448 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 13388 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 13328 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 13267 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 13207 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 13147 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 13087 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 13027 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 12967 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 12907 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 12847 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 12787 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 12726 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 12666 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 12606 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 12546 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 12486 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 12426 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 12366 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 12306 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 12246 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //