Array 1 469590-470837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMB010000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 308 NODE_3_length_728800_cov_66.572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 469590 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 469651 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 469712 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 469773 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 469834 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 469895 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 469956 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 470017 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 470078 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 470139 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 470200 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 470261 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 470322 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 470383 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 470444 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 470505 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 470566 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 470627 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 470688 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 470749 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 470810 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487097-487919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMB010000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 308 NODE_3_length_728800_cov_66.572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487097 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 487158 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 487219 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 487280 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 487341 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 487402 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 487463 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 487524 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 487585 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 487646 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 487707 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 487768 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 487829 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 487890 29 96.6 0 ............T................ | A [487917] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //