Array 1 481-2166 **** Predicted by CRISPRDetect 2.4 *** >NZ_FERE01000043.1 Neisseria meningitidis strain 2842STDY5880996, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 481 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 547 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 613 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 679 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 745 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 811 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 877 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 943 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 1009 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 1075 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1141 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 1207 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1273 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1339 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1405 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1471 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1537 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 1603 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1669 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1735 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 1801 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 1867 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 1933 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 1999 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 2065 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 2131 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //