Array 1 14435-17525 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMBH01000001.1 Yersinia pseudotuberculosis strain 19-YE00107 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14435 28 100.0 32 ............................ GGTGGCATGCCGGACTCAACGCCTCAGTAATG 14495 28 100.0 32 ............................ GCGATACTTTGCAAGCAATGCTCCGTGGTATC 14555 28 100.0 33 ............................ ATCGATACATTGGGATATGATTAAGATAATTAT 14616 28 100.0 32 ............................ GGGCATAGATATGCATCAAGGCGCGGGCCCTC 14676 28 100.0 32 ............................ AATAGTTAGAGTTGCAATGGCATTGGTCGGAG 14736 28 100.0 32 ............................ AATGTGCCAGCCATGCCGGCACAGCGTGGCAC 14796 28 100.0 32 ............................ ACGTCGCGCAACGCAAGCGAGCCAGCGCACCG 14856 28 100.0 32 ............................ GATGCCGGTGCTATCAATGCCGATGTGGGTAA 14916 28 100.0 32 ............................ ATACACGTATCGGAACTCTAATGGGGCACGAT 14976 28 100.0 32 ............................ CGCTGAATCCGTGCAGTTGGTCCCCGCGTTGT 15036 28 100.0 32 ............................ AAATGGCCTGGCGGCTTTGGGGTCGTGGTCTT 15096 28 100.0 32 ............................ ATATTCATGACAAAACCGGCGTCATTAACTAA 15156 28 100.0 32 ............................ TTGCTAACATTCGCACCATTAGAACTTTTGTT 15216 28 100.0 32 ............................ TCCGGTCAACGCCACGGGTTGCTACATAATTA 15276 28 100.0 33 ............................ TTATTTAATTGGAATGGGTGGGGCTTCATGGGC 15337 28 100.0 32 ............................ TATGTCGGATAGTAACGTCGAGGGGTTCCGAT 15397 28 100.0 32 ............................ TTGCACCGTTTCTAGATTTAATGCTTTTAATG 15457 28 100.0 32 ............................ ACGCTAATCTCTTGCATAGTATCACCGAAGGG 15517 28 100.0 32 ............................ AGCTTCTTCGTGACTCATCCCGCCGCCGACAT 15577 28 100.0 32 ............................ TAACTCTTGGCGGTCTTCACGGATAGCAAAAT 15637 28 100.0 32 ............................ AATAAGTATGCATAGCCTCAACCGCCAGTTCC 15697 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 15757 28 100.0 32 ............................ TCCTCGCGACAGCGAGGAGGAGGAGGGAGAGC 15817 28 100.0 32 ............................ TTTGGTGTCTCAGAGATGACAATTAACAACTG 15877 28 100.0 32 ............................ TGAAATATGGCGTGATAAGCCGGAAGCGCAGG 15937 28 100.0 32 ............................ TCGAAGAGTGCATACAACGCGGTGATGATATG 15997 28 100.0 32 ............................ TAAATTTGAACAGGTAAATGGCCGGAGTTATG 16057 28 100.0 32 ............................ TGACTGCATGAAATCATCAAGTATTCCATCTA 16117 28 100.0 32 ............................ AACGATCACCAACTTTAAACATGTGAAATTTT 16177 28 100.0 32 ............................ CCGGAGCGGTACCTCGTTAGCCCGGAGGATAC 16237 28 100.0 32 ............................ AGAATTACAAACGGCTTATAACACAGCCATAG 16297 28 100.0 32 ............................ TGCAACTAAACAAGTTATTGAGGGATATATGG 16357 28 100.0 33 ............................ TGAGAACCAGATAAATCCTCACCTAAATTTGTT 16418 28 100.0 32 ............................ TATTCCCGCTAAGTTAGTCCCTGTATTTGCAA 16478 28 100.0 31 ............................ GCAACTAAAGAAGTTATAGAGTCATATATGG 16537 28 100.0 32 ............................ CTAGTGTAATAGCTAATAACACGTCTGGTATT 16597 28 100.0 32 ............................ AAGAACCCGTCAGGGATTGACAAGAAAGCAGC 16657 28 100.0 32 ............................ GAGATTAATTGTATCGTAATAACTAGCCACGT 16717 28 100.0 32 ............................ ATGAAGCGCCAGCGCCACCCATTAATAACGGT 16777 28 96.4 32 A........................... GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC 16837 28 100.0 32 ............................ CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA 16897 28 100.0 32 ............................ GTTGATACCTTGTTTAAATTCAACGGTCTTTA 16957 28 100.0 32 ............................ GGATGCCATCGACTGCGAGTGAGCGTAAGCGC 17017 28 100.0 33 ............................ AATTAGTTCGCGAACATCACTCTCAGATAAAAT 17078 28 100.0 32 ............................ TTACAAAAGGTTGTCACTGATGACCGTCGAAT 17138 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 17198 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 17258 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 17318 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 17378 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 17438 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 17498 27 85.7 0 ...................-A.A.C... | T [17522] ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6528-7875 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMBH01000045.1 Yersinia pseudotuberculosis strain 19-YE00107 NODE_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6528 28 100.0 32 ............................ AACAAGAAACGAACCAAGGCCAGACTTTGCCC 6588 28 100.0 32 ............................ GTTAGTTGCTGCTAGCGTTCCATCAGCACCGA 6648 28 100.0 32 ............................ AGTGAGTTTTGAACCGGAACGACACCAGCATC 6708 28 100.0 32 ............................ ACTTGCGTTGTTCACTCATGTTAAATCCTCGC 6768 28 100.0 32 ............................ AAGGAAAATGCCATTAAGATAGTAACGAATAT 6828 28 100.0 32 ............................ ACATAATCATACTTCTTAGTTGGAATTTTACC 6888 28 100.0 32 ............................ GCTTACAATACGTTGATTATATCTATGACGGT 6948 28 100.0 32 ............................ CTTCAAAGGACATACCAGACTTGTGGCAAGAT 7008 28 100.0 32 ............................ TCGTAAATCATTAATTAACATTCGATCTATAT 7068 28 100.0 32 ............................ GTAGCTGCCGCGCTCCATCGTTCGATTGAATT 7128 28 100.0 32 ............................ CTACTCCGAAACTACAGAGTGTGATTACATTT 7188 28 100.0 32 ............................ GTGATGGGTAAAGTTACGGCATCAGGTGAGTA 7248 28 100.0 32 ............................ AATCTGACCAGACATAGATGTATGTGCCCAAC 7308 28 100.0 32 ............................ ATTGCGCGAAGTTGACCTACTGTGACGCCAAG 7368 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 7428 28 100.0 32 ............................ ACGAGCGCCGCAGCTACAGCGTTGAAGAGTTA 7488 28 100.0 32 ............................ TACGCAGCAGCAAGACCATTAGCAGCGGTTCT 7548 28 100.0 32 ............................ TATGACTTTTCATCGCAGCGATACACTCAGTT 7608 28 100.0 32 ............................ GATCTCGCCGTCCAATAGCTCGATAATTGAAC 7668 28 100.0 32 ............................ ATGTTTGCTGACGTGCCGATTGAATAGTCACC 7728 28 100.0 32 ............................ AACTTGAAACCTTCCCAGCAGTGACACTGGAT 7788 28 96.4 32 A........................... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 7848 27 89.3 0 .....................CC.-... | T [7874] ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAACAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //