Array 1 88301-89916 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKP01000008.1 Salmonella enterica subsp. enterica serovar Infantis strain CVM N48694 N48694_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88301 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 88363 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 88424 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 88485 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 88546 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 88607 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 88668 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 88729 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 88790 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 88851 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 88912 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 88973 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 89034 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 89095 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 89156 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 89217 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 89278 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 89339 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 89401 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 89462 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 89523 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 89584 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 89645 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 89706 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 89767 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 89828 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 89889 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106199-108096 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKP01000008.1 Salmonella enterica subsp. enterica serovar Infantis strain CVM N48694 N48694_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 106199 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 106260 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 106321 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 106382 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 106444 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 106505 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 106566 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 106627 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 106688 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 106749 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 106810 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 106871 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 106932 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 106993 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107054 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107115 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107176 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 107237 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 107298 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 107359 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 107417 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 107478 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 107539 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 107600 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 107661 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 107722 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 107783 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 107844 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 107945 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 108006 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 108067 29 93.1 0 A...........T................ | A [108093] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //