Array 1 563172-564461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYND010000002.1 Erwinia persicina strain CFBP8803 CFBP880302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 563172 28 100.0 32 ............................ GGGTTGCGGTTTATTGCTGGAGTAGTATTACC 563232 28 100.0 33 ............................ AACACGGTGGCGATGATTGTTCACGCCCCGCTA 563293 28 100.0 32 ............................ CTCCGCTTCCAGATGCCCAGCTCTCCGCGAAA 563353 28 100.0 32 ............................ TCTATGGAGAGGAGAGGCGCACCGGGATTAGT 563413 28 100.0 32 ............................ AGGAGCGCAGCGCCTCGAAGTTTGAGCCACTT 563473 28 100.0 32 ............................ CATGCATCAGCGTAGGTCTTTGGCTCAGAACC 563533 28 100.0 32 ............................ ACTAAACCAAATTGCTGTTGTTCAATAATATC 563593 28 100.0 32 ............................ AGTAGAACCAGAATGTGATGCTATGAAAGTGA 563653 28 100.0 32 ............................ AATCAAGGACTTAGCTGGCGCTGCGTGTCGCG 563713 28 100.0 32 ............................ TTTCCTGCGTGGTGCCCTGCAGCAGACCAATG 563773 28 100.0 32 ............................ CACCAGCACGACACTGTGACGTGTGACTTCAG 563833 28 100.0 32 ............................ TAATGCTGCGCTAGATCCTGAAGTTATCCCGC 563893 28 100.0 32 ............................ CGGACGCGGATGACAGTGACTTTGAAATAAAA 563953 28 100.0 32 ............................ TCATACGGCACATTGGCCGCGTCGAGTGCTAC 564013 28 100.0 32 ............................ ACCTCATTAGGATCACCCCCACCGACGACCAG 564073 28 96.4 32 ..........C................. ATCATTCGCCGCCATGTCACGCATTGGCGAGC 564133 28 100.0 32 ............................ GTGAGGGGCGGCATTCAGGAGAGAAGACCATG 564193 28 100.0 32 ............................ ACTATCGTTTCAAACACGTCAGGCACAAACTC 564253 28 100.0 32 ............................ TCAAAGCAGCAGAGGATGTTATCCAGCCCTAT 564313 28 100.0 32 ............................ AGATGATGATGCAGCCGTCACAGGATGACTTG 564373 28 100.0 32 ............................ ACATTCCAGATGGTTGTAACTGGTTCCAACTG 564433 28 100.0 0 ............................ | T [564459] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCTTACGATTTCCATCAGGCGAACAAGATTAACGGTGTTGCGTTTAACATGGATAAGCCATCGTTTGAAGTGAAGCAGGGAGCCTTTGAGAAATGGACCGTTTCCGGCGAAGGCGACATGATGCTGCATCCGTTCCATATTCACGGCACCCAGTTCCGTATTCTCTCTGAAAACGGCAAACCCCCTGCGGCCCACCGCAGCGGCTGGAAAGACACGGTGCGTGTCGAAGGCTGGCGCAGTGAGGTACTGGTACGCTTTAATCATCAGGCCGACGCCGCCAATGCTTATATGGCCCACTGCCACCTGCTGGAGCATGAAGACACCGGTATGATGCTCGGCTTCACCGTGGCGTAATCTCCGGCACGGCAGACCCTTTTTTTGAGTCGATTTATATGTTACTGATTATTATCAGTATTTAAGCAAAGTGAGAAAAAAGGGTTTTGCCCAAACATCGTGATAAAAGGTAAGGAAGTCAACGGGGTAATGACGTAAGCTAACG # Right flank : AGGGATGAGAGTCACAGAGCAATAGATAATCAGAACATTCAACGACAGTCGACAGAAAGAAGAGGATGGCAGGTAGTGAAAATCGCTTTTTCGTCTACGTAGGGGGCGATCAGCGATCGACCCGCAGAGGTTAAACGTTGCATGATTATCTCACTCATCACCGCCTGAAGCGTTATAGCTCGCAGACAGCCTGATATGAAAAGCGGCGATTATCGCTTAACTCAACCACGCATAAGGAGGATCCTCACAAAACTGCACTATTTCTGTACGGAGATCATGGTTGTCGCGGTAGATTAAGATTATCTGTATTCCTTTGCGTAGATAAAATAAAGTTCGGTAGTAATGGAATCCAGTTAATGCGGTGATAATCATTAGCATGAATAGTCTGACAGCATACGGGAATTAACCGAACGTATAAAAAGGATGGGTGACACGGATGAATTCAAATGGAAATGATTAAACCTTCCGATTTAAAAACAATTCTCCATTCAAAGCGTAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 573260-574788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYND010000002.1 Erwinia persicina strain CFBP8803 CFBP880302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 573260 28 100.0 32 ............................ GCCAGCATCACACCTCGCATCACTCTCATGAT 573320 28 100.0 32 ............................ CACCACAGGATCAATAACCATGGCGATACCCT 573380 28 100.0 32 ............................ TGAGTGACGTAAACGACAGTACATTTCATCGC 573440 28 100.0 32 ............................ ATATCGAAGTCGCGGCGCTCAGTGGCCAGCAT 573500 28 100.0 32 ............................ ACCCCCGCCTACGTCTACGCTGTACTGCTGAT 573560 28 100.0 32 ............................ AGTCTGAGTGACAACTGATGCTGAGTCAGCCC 573620 28 100.0 32 ............................ TTCATAACGACCACCATTCGCATCAAACAGGG 573680 28 100.0 32 ............................ TGGATGAAACGCGCACTGAAAGCGGAGATAGA 573740 28 100.0 32 ............................ ACGACCCCGTTTATGGTGTATGCAGTAACAGT 573800 28 100.0 32 ............................ TATGCGGGGGTGGAAAGTGAAAAAAATGCCAG 573860 28 100.0 32 ............................ GGTGAAGCGGGCGATAACATTGGGCGCGGTGG 573920 28 100.0 32 ............................ ATGAGCCACATCCAGATAGAGTATGTAAAACC 573980 28 100.0 32 ............................ GTATGGATGATGACAGCCAGTGCAGAGATGGC 574040 28 100.0 32 ............................ GTCTCTGCGCATGGCAGTTGACAGGTTGTCGA 574100 28 100.0 32 ............................ TGGCTGGCCCACTTGAACAGTAAGCACATGTC 574160 28 100.0 32 ............................ ATAGCGCAAGGCGGAGCTTCTTCTATCGACAA 574220 28 100.0 33 ............................ CAACTGCACATGGCAACGAAGCTATCACTCCGC 574281 28 100.0 32 ............................ TGAGCAAGCAGGTGAAATCATGACAACAGGAA 574341 28 100.0 32 ............................ TTTTGGCGCTTTAGCTCGTGGCCGACAAGAAA 574401 28 100.0 32 ............................ TCCGTGGCGTGCAGCGCTTTGACCTTGGTCAG 574461 28 100.0 32 ............................ ATGCAAAGAAGAGGTGGCTTGCTGGGTAAATC 574521 28 100.0 32 ............................ CGGAAAAGCCCACGTCATGGCCGAACTGGCAT 574581 28 100.0 32 ............................ CGCTGAATGATGCAGCTTTCACCGCGCATCAT 574641 28 100.0 32 ............................ ATATGCAACTGACGCCCTGTCATAGGGCCTTT 574701 28 100.0 32 ............................ GCCGAGTTCCGCACTATCGTGCGTGGCGAAGG 574761 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGGACCTGATGACCCTGAAGCAGAGCAGCTGGCTGCAGGGGTTGCTGGACTATATCTCCTGCGGAGAGATAACTGCTATCCCTCAGACGGTATCCTGGCGAGTAGTGAGACGCGTTCAGGTAAAAAGCAGCGCGGAACGCCTGCGGCGTCGTTCCGTCAGTAAAGGGTGGCTGAGTGAGGCAGAGGCACAGCAGCGCATCAGTGTCTGCGACGAGCAGCGCAGTCATTTACCCTATGTGCTGATTAAAAGTGGATCTAACGGTCACGCTTATCCGCTGTTTATTGAACATGCTCCGATCCAGTCCTCGCAGACGACGGGCAGTTTTAATTCCTATGGTTTAAGTGCCACGCAAACCATCCCCTGGTTCTGACCCTTTTTTTGCCGCTGGTGCTAACCTATTGATTTTATGAGGTGCTGGCGGCTCGATTAAAAAAAGGGTTTTTGCGCGTCAATTTCTTAATGTTATGGTTATTAAGGTTTTTTAGTGTTTTTATAACA # Right flank : AACAGGGTGGCCAGTTAGCGTGAAAGCGAGGGGAACGCCTTACAGGGAGTGTCCGGGGAAGAGAAATTTCGCAGGGGCCGATCAGCGATCGACCCGCTACCTTACCGCGAGAGCGTTACGCCAGCGACAGCCGTACGTCCTCGATTAAATCCTCTTTATTCTCTATGCCAATCGACAGGCGAATGGTGGAAGAGGTGATGCCGAAACGGTTGCGTACTTCGATCGGTACGCCGGAGTGGGTGGTGCTGGCAGGATGGCTGGCAAGGGATTCGGTGCCGCCGAGGCTGACCGCCAGCTTAAACAGCTGCAGGGTGTTAAGGAAGCGGAATGCCGCCGCCTCACCGCCGCGAATATCAAACGAGAACGTCGAGCCGGCACCGCTGCACTGGGTGCTGAACACTCTGCCTGCGGCAGAGGCCGGGTCAAGGAACGGCAGGTAGTGGACCTTTTCCACCTGCGGATGGCTTTGCAGGAAGGCGGCCACCGCGGCGGCATTATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //