Array 1 804192-813258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDF010000001.1 Clostridium algidicarnis strain CM012 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 804192 29 100.0 36 ............................. AAACAATATAAATAAGCTAGGCGTTCAAGATTTAGA 804257 29 100.0 35 ............................. TTAACTAAATTAGATAGTAGTTGTCTTATGTCCGT 804321 29 100.0 36 ............................. TTTTATTGATAATGGTAATTGATTGAATTTAGATGG 804386 29 100.0 37 ............................. CCCAAATTCATCTCTGTGTAGAGAATTTAATCTTTCT 804452 29 100.0 35 ............................. TTGCAATTTTGGTATATTCATTCTCAAATTCATAC 804516 29 100.0 35 ............................. TGTGTTAACAAAGACGAAGAAAAAACAGGCATACC 804580 29 100.0 36 ............................. ATAGCAACTGTGTATTTACTAGTACTAGCATACATA 804645 29 100.0 35 ............................. TCTTTTAACTGAACTAACATATCTTTAAGTTTATC 804709 29 100.0 36 ............................. CTTTAAAATCCGAGTAATGAAAGTGTCTTATTTTAG 804774 29 100.0 36 ............................. CATGCTTATTGGAGGAGACACGGGTTCGGGCAAAAC 804839 29 100.0 37 ............................. GAGGTTATAGCAAAGGCTTCTATGGCAAGTTGGGTAG 804905 29 100.0 36 ............................. AAAAAGGAGGGAAACAATTATTGGAATTTTTTAATT 804970 29 100.0 35 ............................. AGATTATCAAAATTAGAGAAGGATAATGTAACTCC 805034 29 100.0 36 ............................. ATTATAAGCATTGCCCTCCTTCTATTATTAAATTTC 805099 29 100.0 37 ............................. CAGAACAGAGCATAGATGGGGATGGGATATTAAGTTC 805165 29 100.0 35 ............................. AAGATGGCAAATTAGCAAGTATTAGTGGTGTAAAT 805229 29 100.0 36 ............................. ATGATAGGCAGCAGGCTAGGAATTATAATATTGCAA 805294 29 100.0 35 ............................. AAAATTAAGATAGATATAAATGTTAGGGCCATATA 805358 29 100.0 37 ............................. GTCGTAAAAGATGCTGATTATACATTTAGTTTCACAT 805424 29 100.0 37 ............................. TCTTTCGTAATAACTAGAGGACTTATAGAACGGCCAG 805490 29 100.0 37 ............................. AGTGTATTCTCAAATTCAATTGTATTATGAGTATAGA 805556 29 100.0 35 ............................. TTAGCAGTAGTAATGTCTGTAATGCCATGTCCCAA 805620 29 100.0 37 ............................. AGAAAAGGAGGATAATAAAGTGGAAAAGTTAACATGG 805686 29 100.0 37 ............................. AGGAATAGTAGAAACTACAGTTAAGCAAGCTTGCCAG 805752 29 100.0 36 ............................. AAGGGCTAGTCCGAAAGGGGATTGTACAATGGAAAA 805817 29 100.0 35 ............................. CATTTTGACAAAACTTTAGGAGAATATGTAGGATT 805881 29 100.0 37 ............................. GTAGGAAATGCAACTTATATTAATAAAATTAATAATA 805947 29 100.0 35 ............................. AAATATGCTAATACTTCATATATATTTTTAAACAT 806011 29 100.0 34 ............................. GAATTACACATTTCTATCCCTATACTATTTGCAT 806074 29 100.0 36 ............................. TATATATTCTAATCACTGATTAATTAATAATCACTA 806139 29 100.0 36 ............................. GCCTTTAGCAATTAAAGCATTCCATGCCACATCACT 806204 29 100.0 36 ............................. CTCACAGAAGTAGGATATTTTAAATCTACAGTAGGA 806269 29 100.0 35 ............................. AACTACCTGTAATATTTGTGCAGTTACCTAAACTT 806333 29 100.0 36 ............................. AATACAGACGAATGTAGTCTTTATAAAGATTGGGAA 806398 29 100.0 36 ............................. TGGCTCATGTGGGAGTTTTTTTTTGCTTTATTTCTT 806463 29 100.0 36 ............................. GATAATGTTTGTGACTTAAAAACAGCTAATTATGAA 806528 29 100.0 36 ............................. ATATAAATGATAAATCAAAGTTTGTTACTTTGACTT 806593 29 100.0 36 ............................. TGCGTTAAAGTTTAAATTTTTAAATTTTACTTTACA 806658 29 100.0 36 ............................. ATTACATTTAAAGGTTTAACAAGTGTTGGTTCTAAC 806723 29 100.0 36 ............................. AAACAAAAGCTATACGCATAGTAAAACTATAGATTT 806788 29 100.0 36 ............................. ATAGTTTTTACAATACTTTCCATCGGAGCAACCTCA 806853 29 100.0 36 ............................. TTTGAAGATTTTATTACTCTTACATTAGACAAAGAA 806918 29 100.0 36 ............................. GTTAAAAAAGTAAATGCAGTTGAAACTGAAATTTTA 806983 29 100.0 36 ............................. TCTAAAAACAACTCATCTTTCTTTGATTGTAGTAAA 807048 29 100.0 37 ............................. TTGAGCTTTCTAAACCATGATATTCTCAATTGCAAAT 807114 29 100.0 36 ............................. CAGTAGAGGATAGAGTGAATAACCGTGTAGGAGTAA 807179 29 100.0 36 ............................. TAGAAAAAGGGTGGAAGTTATTTGAAGATAAAGTTA 807244 29 100.0 36 ............................. TATACTCTAAAAAGCTATTAAACCTACCGTCTATAA 807309 29 100.0 36 ............................. TTCTGATAGAAAGATTGTAAACAATTTAGAAATAGG 807374 29 100.0 36 ............................. CTACTCTTTTAATTAATTTATCCCCAATTATTTCAT 807439 29 100.0 36 ............................. TAGGAGAATTGGAAGGTAATAAAATAGAAGTTTTAA 807504 29 100.0 35 ............................. CTAAAGGTGGATAATACAAGGATGAAGCATAGTGT 807568 29 100.0 35 ............................. TTACTTTTTTATCAAATCCTAGTGAGTTATATTTA 807632 29 100.0 35 ............................. AAGTAACTCATATCTTGTATGCCTGTGCAAAAACT 807696 29 100.0 37 ............................. GCACAAATTAAGCCTGTAATGTAGTCTAAAACCATTA 807762 29 100.0 35 ............................. TAAATAAGTTAAAAGGTGGAATAAGCTATGTTAAA 807826 29 100.0 34 ............................. CAACGAAAGTTTACAGAATTAGAAAGGGAATTAG 807889 29 100.0 37 ............................. TAAGACAAGACTCACCCTTAAAAGTCTAAAAATGATT 807955 29 100.0 35 ............................. TATAGAAAAGAACATGGTTTATTAATCTTACTCTA 808019 29 100.0 37 ............................. TTCTATTAGGAAGTTATGTTCACAGTTGGAGTTCTGG 808085 29 100.0 35 ............................. CGTTGTCGGACGTAGAGAACAATAAAACTAATCCA 808149 29 100.0 36 ............................. GTTAACATTTAACTTCTTGGCTATATCTGTTATCTG 808214 29 100.0 36 ............................. ACGTAAAAAAAAGTGTAAATTGGAAGAAAGATTTTA 808279 29 100.0 37 ............................. GGTATAGCTTTTATATCGTCCCAAATCCCCCTTAAAG 808345 29 100.0 35 ............................. ATGAAAAAATAGAGGTAAATATAAATAGTGGTGGC 808409 29 100.0 36 ............................. AAATTTATAGGTTTAACAAGTGGTGTACTAGGATTC 808474 29 100.0 36 ............................. CTATTATTGCAACGTGGTAGAGAAAAACTTGCAGAA 808539 29 100.0 36 ............................. TAATATATTAATGAATAATATAAAAGATAGCATAAT 808604 29 100.0 38 ............................. ATAGATAAATAAAAATAATAAAAAGAAAGAAGGAATTA 808671 29 100.0 35 ............................. AGATAGGCGAAAATAATCCAATGTGGAAAAAAGAA 808735 29 100.0 37 ............................. TTAATAATATTGGGAGGCTGCTTTTTAATCCTCTTTT 808801 29 100.0 35 ............................. TTTAGATATAACAAGTTTAGCTCCATCGACTATAC 808865 29 100.0 37 ............................. ATAGTTTAGGAGGAGAATTATGTTCGATATAAGTACA 808931 29 100.0 37 ............................. GAAGTTGGAGAAGGAGATAACATAATTGATGGTAAGC 808997 29 100.0 36 ............................. GTGCCTAAAGAACTACAAAATGGATACATCTCTTTA 809062 29 100.0 36 ............................. GCAAGCTCTTGTCCCCATTATACAACGTGCATAAGC 809127 29 100.0 35 ............................. AAATTCTTATTAACATAAGTATAACACAACATATT 809191 29 100.0 36 ............................. TTACAAAAAAACAGAGAAGATATAATTAAAGGATGG 809256 29 100.0 36 ............................. ACTTGCGGATAATTCTCCAACTGTTACTTTTCCTTT 809321 29 100.0 36 ............................. AGATTTACGCTTAGAACATCATATCCTAGAAGAAAA 809386 29 100.0 36 ............................. TTCATTTACTAGGCATAAACAGTAAATTTTAGCTAA 809451 29 100.0 37 ............................. TTGTTAATGCTACTGGTGTAAAAGCTAATGATGCTAC 809517 29 100.0 37 ............................. AACTCTATAAGAGGGTGTTGCAATGGCTCATGCAAGC 809583 29 100.0 35 ............................. ATGATAGAACAATAGGAGGGAATAAAATGTTAGAA 809647 29 100.0 35 ............................. TGCTTTAAATCCTGCAAGGTCAGGGGTGGTTAGTT 809711 29 100.0 36 ............................. ACACCAAAATATGGTGACCAACTATTCAGAATTAAA 809776 29 100.0 37 ............................. AAGCTTCAACAATCTCTTTGTTTTCTTTTATCAATTT 809842 29 100.0 37 ............................. TAAAAAGCTAGTATCCAGAGGGTGGACAAGTAGAAAA 809908 29 100.0 36 ............................. ACTGTAATCTACCCCCATGTTAGTGTACACTTCTAG 809973 29 100.0 36 ............................. TTGAGGGAAATGAGCATATTCGCGAAGATACTTTTA 810038 29 100.0 37 ............................. TTTCTATATCTGTATCATAATATTTAAAAACAATTTT 810104 29 100.0 36 ............................. GAAGAGGCTGATAAGATGTTTGGAGCAGGTGCAAAC 810169 29 100.0 35 ............................. AAATGAAATAATGAAGCATTGTACTGATAAAAAAG 810233 29 100.0 37 ............................. GAAAAATATATAGATAGTAAACATATAGGTAGTTATC 810299 29 100.0 36 ............................. CCCATTAATAATTGTTCACTATTTAATAACATTTGT 810364 29 100.0 37 ............................. TTGGGAAAAGTAGGAAGAGAAACAATTGAAGAAATAA 810430 29 100.0 36 ............................. AGGTAGTACAAAAACTGATGACAGGCAAAATGCTTT 810495 29 100.0 36 ............................. TTATTACTGATAATTGGTACGCTTGCGGGTTCAATT 810560 29 100.0 36 ............................. TATATTTTATTGTATCATTATCTAATTATTTAAGTA 810625 29 100.0 36 ............................. AAGCTCCTCCTCTTGTATATTGTTCTTAATTAAAAA 810690 29 100.0 35 ............................. TTTGCAAACTTTCTATTTCTAAATCTTTTTTATCT 810754 29 100.0 35 ............................. GTTAAAAAAGTAACCATAAAAAATATACAAAAAAC 810818 29 100.0 36 ............................. TCATCTTTTAATTCGTCACCAAATTCTAAGACCTCT 810883 29 100.0 36 ............................. ATACCTATAGTAGATAGGCCCCCACCCGCCCAATCC 810948 29 100.0 36 ............................. ACAATCTTCATATTGGCTTTTAACACTTGTGCCGAA 811013 29 100.0 36 ............................. CAATTCAAAAAATATTACAAAGGAGTAATGGGAATA 811078 29 100.0 36 ............................. CTCTATAAATCTTCGGCATTCTTCATTCAGCATCAA 811143 29 100.0 37 ............................. CTCTATAAATCTTCGGCATTCTTCATTCAGCATCAAC 811209 29 100.0 36 ............................. TGTAAAACTTTCGTTAGGATATTCTATTAATGGCTC 811274 29 100.0 36 ............................. ATTTTATAAATTATTTGTATCAATTAACCTTTCAGC 811339 29 100.0 35 ............................. TTTTCTAAAGAATTGGTATTAAGGCATTTATCAAT 811403 29 100.0 37 ............................. TAAACAACTAAGGACTTGTGGTGCAGCTCGGGAGTGG 811469 29 100.0 37 ............................. ATTATTATTTGTCTTATGCTTATCATTATGCGAGTGA 811535 29 100.0 37 ............................. TTAGTATAATTTCAGAAGACGGTGACGTTGTTTTTGA 811601 29 100.0 35 ............................. TTTAACCACTTTACAAGTTTGTCACTCACATTCTC 811665 29 100.0 36 ............................. TTAGGCAATCCCATATGAGGACTTTTTAATAAAATT 811730 29 100.0 37 ............................. TTATTAAGTCGGTGTATGTGCTCAAATTATCATTGTA 811796 29 100.0 36 ............................. CTAAAACAATTTTGCAACGTAGTACCAGTAGGTACT 811861 29 100.0 37 ............................. TCGTAACTATGTCGCCTAAGTCAAAATCAATTTTATA 811927 29 100.0 37 ............................. TGCAAGTCCGCTAAACTACCTGTAATATTTGTGCAAT 811993 29 100.0 37 ............................. AAATTAAAATGGTAAATAATATTAACAACTTAATAAT 812059 29 100.0 36 ............................. CTTACAAAATCTTTTACCTTGGAATAAGCAGTTTTT 812124 29 100.0 36 ............................. AAATATTTAGCAGGTGTAAAGGAAATAGGAATAAAA 812189 29 100.0 36 ............................. ATCGCTCTTGTTGCAATTGCTGGTGGTGTTATCTTT 812254 29 100.0 35 ............................. TTAACCTATAATTACTTAATTAGTGTACTAACTAC 812318 29 100.0 35 ............................. AATATATAGATTTTGCTGATGTTAAAGCAATCTAT 812382 29 100.0 36 ............................. TTATTCTTTGAATACATATTATTACGGTTATACTTC 812447 29 100.0 36 ............................. TCTAATTTGACAATTACTATTAATCCTCCTGCTGGT 812512 29 100.0 35 ............................. TTGATACTAAATAACACAGTAAAAACATACAGGAT 812576 29 100.0 35 ............................. GATTTAAGAGGACAGTTTATAAGAGGTTTCGACAA 812640 29 100.0 37 ............................. AGAACCTTTTAACCTATATACTTATATCAACAAATTC 812706 29 100.0 37 ............................. TTGGATAATTTGCAATTTACAACTAAATTTGATAGTA 812772 29 100.0 36 ............................. CAAGGATATTATATTATGTTTAATGTTGGTAATTTG 812837 29 100.0 37 ............................. CTTGCATTATTCCGTCTGTTGCATTTTCTAAAGATGT 812903 29 100.0 37 ............................. TTGTAGATTATATTTTCTCTTTGCAATAGGGTTAAAT 812969 29 100.0 36 ............................. AAAGAATTAATAAAACAAAAAACAAACGCAGAAAAA 813034 29 100.0 37 ............................. CCCTAAACCACTTGCTTTACTTAGTTTAGTTAATTCA 813100 29 100.0 36 ............................. TCTGTTTCACCTTATTTAGCTTCAAAAGGTGTTCCT 813165 29 100.0 35 ............................. ACAACTATGGTTATACTAGGTAATGGAAATGATAC 813229 28 79.3 0 ............G...-......T.T.GT | C,A [813238,813249] ========== ====== ====== ====== ============================= ====================================== ================== 140 29 99.9 36 GTTTTATATTAACTATGTGAGATGTAAAG # Left flank : AAGTGTTTTAAATGATTAAAATTAATGATATAATGGTGGTGATATTTTGTTTGTGATTTTAACTTATGATATTGAGGAAAAGAGGATAAATAGAGTTAGAAAAACACTTAAGAAATATTTAACATGGACACAAAATTCAGTGTTTGAAGGTGAGATAACAGAGGGAAAGCTCCACAAATGTTTATCAGAGATTAATAAACTTATAGATAAAAAAGCAGACTCTATATATGTATACAGGGTAAAAATATCTAAAAATATTAGAAAAGATGTTATTGGAATAGAAAAAAGTTTTGATGAACTTTTTTTATGACTAAAACTGCATCGATGCAAACAAAGGTTCTAGGTGCGACAACACGTTGATTTTACTGTATTAGAATAGAAGTTTCTATAAAATAACAAAACATTATTCTAGGTTCACTGCAAAATTGTCTATTTAAGCACTATCAATGGTAGCGCCTAGGCCAGTAATACCAGTATGTTAATTAATTGTGATCTTTGGG # Right flank : TACATTAATCTATGAAGAGACCTTTGGTAAAAGCTATAAAGAACTTAAAGCTGATTGAATTAAATACCTTAAAGATAATATTAAATATATAGAATTGATACTCTGATACAAAACATTATTATGAAGAACTATAATTTGTTTTTTTATTGCTCCCTTTTTTTATGATCTGAACATTCCCTCCATCTTTTAAGAGGTGGAGATTATTTTTTATAAGAAAGTTTACTATTATTAATAGATATTCTAACCTTATTAAGGTAAGGTGAAACCCAAAATATTATTATTATGATATAGTTAATTAAGAACACTACATAAAGAAAAGAGGAAAAATCATGTCAGAATGTATATTTTGTAATTACAATAAATCAGAGATAATAGCAGAAAACAAATACACCTTTGCTATCTTAGATCACTTCCCAGTAAATGAAGGTCATTGTTTAATCATACCTAAGAGACATTTTATGAACTTTTTTGAGGCAAGTGAAGAAGAGGTTAAAGCCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //