Array 1 36914-37411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVHE01000110.1 Streptococcus pseudopneumoniae strain 434_SPSE 965_37438_1396856_702_,231+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36914 36 100.0 30 .................................... CGATACTATTTTTAGTATGATAGCTGACCA 36980 36 100.0 30 .................................... AATCTTTTTCCACTTTCCAACCTGTACAGT 37046 36 100.0 30 .................................... TATCTTCTAAAATAGGTTTTAAACGACTAA 37112 36 100.0 30 .................................... TGGGTTATCCAGAGCAATAGAGCAAATGGC 37178 36 100.0 30 .................................... CCGAATTGGAGGTATAAAGTTTGATTTATT 37244 36 100.0 30 .................................... TGTTGATGGAAATGCTGAATGCGAGCATGA 37310 36 100.0 30 .................................... CATCGTTAAAGGTTCGCTTCTCTTGAACAG 37376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : AGATGATTATCTATCTTACAAGGAATTTGTTGAGTGTTGCGAAAAGATGGAACTTTTAACAAATCATAGCAACTTGCTTTATATTATTTCGTTTCCTTCAAATGAAGGTTATCTTCATGTCACTAAAGAAGTAATGGAGGAGATTAATATCGTTTCTGATTACGTTGATCATTTTTATTCTTTAGCATTTATGTACGAACGATTTAGCAATCAATACCCAATAAATCAAATACCTGATGAGAAAGAATTTTTAAACTCTTTAAGAAAGATTGGTTCCTATTTATTTAGTGCAGACATTCTTCACATGAGTTTGTCCATCGAGGATCAAGTAGTATTAAAGATTTTAAATAATTTGTATCAGTATGAAATGAAAACAAAATTCTCTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTAGGATTTAAGAATTTATAATATCTTTGAGGGGACAAAAAACAAAATTGACGAATTTGAG # Right flank : GCTGCGGGAGCAATGGAGTCACTAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8112-7812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVHE01000041.1 Streptococcus pseudopneumoniae strain 434_SPSE 605_8137_312113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8111 36 100.0 30 .................................... GGCAATCTTGTATAGATTGTTTTAATTGCT 8045 36 100.0 30 .................................... TGCTATTGATATCGAACTTACCTAAATGGT 7979 36 100.0 30 .................................... CATGATTCCCAAAAGGTTCAAAACTAGCAG 7913 36 100.0 30 .................................... AATAGTTGATGTCAGTCAGAATATAGTAAG 7847 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : CGGGAGCAATGGAGTCACTAATCAA # Right flank : TATCTGCAATAAAAAAACAGTGCCAATCACTGTTTTTCTTGTAGTTTATAGGCATAAACAGTCATGCTGATAGCGTGTTTTAAACGCATATTCATGATATCTGATACACCATTTTTATACTTATCCACTGCCTGAATAGATACGCCACAGTTTTTGCTGATAGCATAGGCTGTGGCATTCTCTAAAAGCCAGCGGATAGCTTTAATATCTACTGACATATATTACCTCATAAAATACCGAACTGCAAATAGGAGTAGAAGAAGTCCAATAACAAATTCAACTTTTTCACGCTTTGTGGTTTTTTATGTTACAACACCCAAGTTCGAATGGCATGAGCAACGCCTGATTCGTCATTAGATTTAGTGATGTATTTGGCGATTTTTTTGAGTTCTGGATTTCCGTTTTCCATAACAACGGGGTTACCAACAACTTCAAGCATGGCACGGTCATTTTCCTCGTCACCGATAGCCATAGTTTCATCCTTGTTCAAACCGAGTTTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //