Array 1 15814-16179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWJZ010000031.1 Streptococcus agalactiae strain 149 NODE_31_length_16217_cov_21.7645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15814 36 100.0 30 .................................... TCCATGATAAACAGCTGCTACAGCTTCATT 15880 36 100.0 30 .................................... AGACATTTACCTATCACTCTAGAAAGTCAT 15946 36 100.0 30 .................................... AGACATTTACCTATCACTCTAGAAAGTCAT 16012 36 100.0 30 .................................... GGTACGTACCCAACGATATACCATGCAGTA 16078 36 100.0 30 .................................... TAATTTCCAATACTTACGATATCTTCGTCA 16144 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TCATACGCACAATGAGGCTTCAAAAGCTTCGTTTTAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 105973-105475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWJZ010000004.1 Streptococcus agalactiae strain 149 NODE_4_length_106013_cov_21.9674, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 105972 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 105906 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 105840 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 105774 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 105708 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 105642 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 105576 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 105510 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GGTTCCAAAACACGTACCCAGCGATATACTACGCAGAATG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 37393-38677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWJZ010000012.1 Streptococcus agalactiae strain 149 NODE_12_length_66289_cov_24.545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 37393 32 100.0 33 ................................ TTTTAATGTCAATATTAGATTTGATGATGAAGA 37458 32 100.0 34 ................................ ATTTATCCAGTTGGTTCAATCGTAGAGTTTAATA 37524 32 100.0 33 ................................ ACAACAAAAATTTTACTTTTTTGTGGAACATTA 37589 32 100.0 34 ................................ AATCACAATAAAGATTGACGACTATAACACACTT 37655 32 100.0 34 ................................ ATGGGATATCGAAAATCATGATATTAAACAATTT 37721 32 100.0 34 ................................ TTAAATGGTTATTTGAAGAGTACAAGTTAAGAAT 37787 32 100.0 34 ................................ TATTCAAGAATATTAAAGATATTGAAGTGAAGTA 37853 32 100.0 34 ................................ AGGTATTAAAGAATTGGGCGGTGACCCATTCAAA 37919 32 100.0 33 ................................ AATATATTTTGGCTGTGTTCTTGCGTAATAATT 37984 32 100.0 33 ................................ CTTTCTTTGTAGCTCCTTCTATTATACCATTTT 38049 32 100.0 33 ................................ AATTTCATCTGTTAGGCTCCTTTTTCGCTTTTG 38114 32 100.0 35 ................................ AATCATAAGCTATCTCAACGCAATCTTTAAGTCGT 38181 32 100.0 34 ................................ AATAAAGTCTGCAAATGTAAAACTTTTTAGAAGT 38247 32 100.0 34 ................................ TTACTGTATTAACTTCTGTACCGTCTGAAAATTG 38313 32 100.0 36 ................................ ATTCAATGAATTTAGGTTCGTGGGATATAGAAAATC 38381 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 38447 32 100.0 36 ................................ ATGTTACCTCCTTTTAAAAAGGTCTATCCTTGCCCC 38515 32 100.0 35 ................................ AAAAGATTATTGCCTTTTTTAATAACACGGCTAAA 38582 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 38647 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 98.9 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTGAGGAACAGTGCATTTTATGGCGCCCTACGCCCTGTCTTATTTACAATATCTATTTGATGCGACTATAACTCATGCTAGTGGGACTGCGACTTTTCCAAAAGGTCAAAGCGATAGTCAATCCAAACTACTCTTGCAATTATCAAATGGGGTCCTCGTAGATATCTTCTTGACAACACGTTTAAATTTACCGCATGAAATGATTATTTATGGAACTGAAGGTCGTCTAATCATTCCACATTTTTGGAAAACCACTCATGCAAAATTGGTGAGAAATGATACTAGTGCGCAAACGATTCAAGTTGACATGGTTAGTGATTTTGAGAAAGAAGCTTATCATGTTAGTCAAATGAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42-341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWJZ010000063.1 Streptococcus agalactiae strain 149 NODE_64_length_379_cov_20.1424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 108 36 100.0 30 .................................... TATCGCAAATGAAACGGGCGCTTTTGCACT 174 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 240 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 306 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GGTTCCAAAACACGTACCCAGCGATATACTACGCAGAATGGG # Right flank : TCATACGCACAATGAGGCTTCAAAAGCTTCGTTTTAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //