Array 1 5312-4928 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZTH01000011.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN057765 CFSAN057765_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================== ================== 5311 24 91.7 36 .......AT............... CCGGTTACCAGATACCATCAGCTCCTTCAGTTCTGA 5251 24 91.7 36 .......A.......A........ CCGGTTACCAGATACAATCAGCTCCTTCAGTCCTGA 5191 24 95.8 36 .....A.................. CCGATTATTATAGGCCCACAGCTTATATAATTCTGA 5131 24 100.0 36 ........................ TTGATTACCAAAGATCCACAGCTTACATAGTCCTGA 5071 24 91.7 36 ................TG...... CGGGTTACTAAAGATCGACAGTTCCAGTAGTCCTGG 5011 24 91.7 36 .......A..........A..... CTGGTTACCAGAGACCTCCAGCGTCCGCAGTTCTGG 4951 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ==================================== ================== 7 24 94.7 36 CGGCAGCGCCGGCAGGCTGGTCAG # Left flank : AAAAAAAATGTGACCCGGTCCTCGCAGCTTGAGGTTGCCTCTGTTGCCATAGCAAAGGTGTTTGCTCTCAACGCCTCATCTTCAGCCAGTTGTGCCAGCCAGGACGATATCTGTGCCTTAAACCCCGCGTCCTTTATGAAGTTTTCCGTCTCACTCAGTCTGTCCAGGAAGAGGCTGAAGGCGTCGGCGTTATCTTCCTGTCCGAACATATGCCATCTGTCTGCAGGAGCCGGTTCCCCCTCCCGGGCAGGCACCAGCCAGTCAGCGGCCGCCAGGTGCAGTGCCCGAGTTTCCCGGGGGGCGGAGGCTCCCGCCATATCGAATTGTATTATGGGGCCTGAATAGCCAGGCGCGCTGGTGATCTCCCGCAGCGCCTGCAAAGTACGTTCAGACAGTGGGTTCCCTTCCAGATTTACGGTTGTCTCTGAAGACAGATGAATGAGACTTTCCGGCAGGCGGGTCAGCTGGTTACGATAGACCGACAGCGACAGTAGTCCTGA # Right flank : ATTATTATCAGGAATAACCAGTGTGGTAATATGCGCGGGTAAACAGTCTGGCAAGGTGGTAAGACCTGATTCTCCCACGTTAAGCACTGCATTGCCATTATTCAGGCAGGCACGCATTTTCTGTACCACTGCTGCACGGCCGCGTGACTCTTCTGCGGGTGCAGCCCTTCTCCACGCTGACCAGACAGCATCATACTCTGCTGGCGTCTGTGGAGCCGTTGTGGCAGGGAGGAAGGATGTCCTGAATGTCCCGGATGCCCCTTCCGCGTGTCCTGTGCCCTCCTCACCCTGTGCTGTGTCCAGGGTGAGGCGATGTGTTTCACTGTACCCCTGGCAATTTACGGTATAGTTCCCGGCATCATCAAGGGTGACTGACAATATCTCCTGACTGTCTTCATCCAGAATACAGAAGTAATTTTCCCCGTGCTGGCCGGAATGAATGCTTTCCTCCCATCCGGCATACGCGAGCGTCCTGAGCAGTTCAAATCTGCTGACCACAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCAGCGCCGGCAGGCTGGTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 423840-424478 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZTH01000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN057765 CFSAN057765_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423840 29 96.6 32 ...........................T. AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC 423901 29 96.6 32 ...........................T. CCGTGCCTGTCCAGGACAAATTGCCGATTATT 423962 29 96.6 32 ...........................T. CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA 424023 29 100.0 32 ............................. GCATGTGACAGTCTGATTTTTATAGCGCATGA 424084 29 96.6 32 ............................C AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC 424145 29 100.0 33 ............................. CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA 424207 29 100.0 32 ............................. TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT 424268 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 424329 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 424390 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 424451 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAAGCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440631-441148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZTH01000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN057765 CFSAN057765_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440631 29 100.0 32 ............................. ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT 440692 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 440753 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 440814 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 440875 29 100.0 32 ............................. GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT 440936 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGGCC 440997 29 100.0 32 ............................. TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT 441058 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 441119 29 96.6 0 ............T................ | A [441146] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //