Array 1 20838-22577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOB010000015.1 Cronobacter malonaticus strain MOD1_GK1360 cmalGK1360_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20838 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 20899 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 20960 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 21021 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 21082 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 21143 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 21204 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 21265 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 21326 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 21387 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 21448 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 21509 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 21570 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 21631 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 21692 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 21753 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 21814 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 21875 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 21936 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 21997 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 22058 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 22120 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 22182 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [22191] 22244 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 22305 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 22366 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 22427 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 22488 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 22549 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2650-3533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOB010000082.1 Cronobacter malonaticus strain MOD1_GK1360 cmalGK1360_contig_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2650 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 2711 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 2772 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 2833 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 2894 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 2955 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 3016 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 3077 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 3138 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 3199 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 3260 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 3321 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 3382 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 3443 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 3504 29 93.1 0 ...........TT................ | G [3521] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //