Array 1 8641-9704 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJNN01000013.1 Streptococcus oralis strain BCC38 D8859_contig013, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
      8641	    28	  96.4	    33	............G...............	CATTCAAGATGGTGTGAATACATTCGTTTACAT 	
      8702	    28	  96.4	    33	............C...............	CTATTCAGCGAATAAAGACGATAGCATTTTATT 	
      8763	    28	 100.0	    33	............................	CGAGATAACTTGTCATCTCAGCTTCAAGTTCTC 	
      8824	    28	 100.0	    33	............................	TGGTCAAGACTGGGCGCATAAGTCAGGGTATGA 	
      8885	    28	 100.0	    29	............................	CAAAATCACAACATTCCTTGCAAGTTCTC     	
      8942	    28	  92.9	    33	............C.T.............	TACGATTGAAGATAATAAGAAAGAAACAAGTAA 	
      9003	    28	  92.9	    33	............C.T.............	CACACCTTTAGGTTGTAAGTTCAATTCCTTCAA 	
      9064	    28	 100.0	    33	............................	CAAGACTCTTACCATCTTCAAGATGTCTGATAT 	
      9125	    28	  78.6	    33	............C..AT.A...C...A.	TGAACATCGACCATGGCAACGTGGTAGAAGAAG 	
      9186	    28	  92.9	    33	........T...G...............	CGCAGTAAATGCCGTGGAGCAGGTTGCAGCTGA 	
      9247	    28	 100.0	    33	............................	TAGACGTGTAGTTGATGAATTGAAGAATGAGTT 	
      9308	    28	  96.4	    34	............C...............	TATTCCTTAGCCACCCTAGCAATTTTTAACCTAC	
      9370	    28	  96.4	    33	............C...............	TAAGGCTATCTTGGTCCTGGCCGAGCAGGTAAA 	
      9431	    28	 100.0	    33	............................	TTTTGCTTTGAGTTCTTCGTCAGATTCGATGAT 	
      9492	    28	  92.9	    33	............G..........A....	TAGCTTGACCGTGTATTCATTTTTCAAAATCGG 	
      9553	    28	  92.9	    33	............C.......A.......	CGAAGATAAGACTATTTCTGTTACTGACAAGGA 	
      9614	    28	  89.3	    33	...........GC.T.............	TAGGATATTGATACAGCCTAGTAGCTAACACAA 	
      9675	    28	  85.7	     0	............G............CTA	|                                 	AT [9697]
==========	======	======	======	============================	==================================	==================
        18	    28	  94.7	    33	GTTTTTCCCGCATACGCGGGGGTGATCC	                                  	       

# Left flank :   GGTTTGGTGTACAGTATAGTGGTAGTGCTAGGTGTTTCTCCAGGTCTTGGTTTTGTACATACCGGTCATGATTTATCCTTTATTTATGATATTGCAGATTTATATAAAGCTGAATTGACTATTCCCTTAGCTTTTGAAATTGCAGCTAATTATACTGAGGATGATGATATTGGTAAGGTTGCTCGATTGAAAACAAGAGATTCCTTCGTAGATGGCAAGTTAATGGCTCGGATTGTTACTGACATTCAATATCTATTTGAAATAGATGATGAAGAGGAGTTAGTGATTGATACGCTTTCTTTATGGGATGATAAGGATAAACTTGTTAAACATGGAGTTAGTTACACGGAGAATTGATAATATGCCACTGACTGTTTTAACTTAAAAAAATGTTCCGCCGTCTTTAAAAGGGGATTTAACCAAGTGGATGCAAGAAATTGCCACAGGTGTTTACGTTGGAAATATCAATACTAGGGTTCGTGAAAAGTTATGGGATCGTA
# Right flank :  ACATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAACAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTGTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAACTCAGATTATCGTTTCTATCGGGCTGGCACAAAACTTTGCGGGTCTGAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGCCACATGAAATTGCAGGCCAAATCCCTAGCTCTCCTAGCTGGTGCTAGTGAGTCCGAAGTTGCTCCCCTCGTTGAGCGACTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATC

# Questionable array : NO	 Score: 5.55
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTCCCGCATACGCGGGGGTGATCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.90,-9.80] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [2-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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