Array 1 3593299-3600697 **** Predicted by CRISPRDetect 2.4 *** >NZ_CH672395.1 Leeuwenhoekiella blandensis MED217 scf_1099517004314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3593299 37 100.0 37 ..................................... AAACTCCCTACTTGATACGGTTTTTTAGGTTCAACAA 3593373 37 100.0 37 ..................................... ACCGGTGCGGTGTAAACTACACCGTCGCTAGTTTTGT 3593447 37 100.0 36 ..................................... CTTCCTCTTGAGGTTTCTCGTCTTTTTTCTTTGTAG 3593520 37 100.0 36 ..................................... AAACCAACCCTATCTATTAATGTATTACTGAGTTCT 3593593 37 100.0 36 ..................................... AGCATATTCTCAATCTCATTAGCTACAATTTGAGTG 3593666 37 100.0 35 ..................................... GGTGAATTCAACCCTGACAATACAGGAGTAAATGA 3593738 37 100.0 36 ..................................... GCGCACCCGCTTATTTATCTGATTGGTACTTCATCA 3593811 37 100.0 36 ..................................... TTCAAGGATATTCTTGAAAAAAGATATGCTGATAAC 3593884 37 100.0 36 ..................................... CCTTCTCCTTTTTTCCGTCTTGATCTACCTCGTAAT 3593957 37 100.0 36 ..................................... AGTAAAACATATTTGAAGAACTCCCATTGCCGTAAT 3594030 37 100.0 35 ..................................... TAGCTTTTTGAACGTCTATAACGGTCTCGCATATG 3594102 37 100.0 35 ..................................... TAAATAAAGACCGAAACACAGTAAGGCATAGTTAT 3594174 37 100.0 36 ..................................... GAATTGACTAAGCCTGTAGGAGAAACTACTAAAATC 3594247 37 100.0 35 ..................................... TGGGAATTAGATTTTGGTAAAGAAAACTACAGATT 3594319 37 100.0 36 ..................................... CAAATATGGACTTACGTAAAGAGTTAATTGATTTTT 3594392 37 100.0 35 ..................................... CTGATGTTATCCCAGGTGTAATTTTGTGAAGTACC 3594464 37 100.0 36 ..................................... ATGCCTATGCAGCAGTTTTTGCAGATGGTTTCTAAA 3594537 37 100.0 36 ..................................... CTGTCTGGGAAAATAGCGTCTAAGGTTAATTTTGAT 3594610 37 100.0 38 ..................................... AGTTTTAGGATCTAGTGGCGGCGGTAGCGCTGCTGCAG 3594685 37 100.0 37 ..................................... TGGCCGGTGATAAAGAACTGGCAAAAAACAGCGTGCG 3594759 37 100.0 35 ..................................... TCCATATGTAAAAGAAAGCAATGCTGGGGTTATGG 3594831 37 100.0 36 ..................................... AAAGTAGCTTAATTAAGTGCCGTTAAATAAAAACGG 3594904 37 100.0 36 ..................................... ATTATGCACGTTCACGTGATCGCGTGAAGGGTTTCA 3594977 37 100.0 37 ..................................... AAAAAGTTTACTAACAATCTAAATGATGTTGAACAGG 3595051 37 100.0 36 ..................................... GAAAAGCAGGAGTTTGGCGGTGTTATTAAAGGCCGT 3595124 37 100.0 37 ..................................... CTAATAATCGCAGCCGGAGTAGTTTATTCTGCTGCAA 3595198 37 100.0 35 ..................................... AAATACTTTGCTTCTATATCGCTAAAGCATAAAGA 3595270 37 100.0 36 ..................................... TCAAGTGTTGACTTTCGATGTGTTAATGAAATTCCT 3595343 37 100.0 35 ..................................... TTTAAACGTCATTGAATCTGAATTGAAAATATTTA 3595415 37 100.0 35 ..................................... TCCTTCTCCAGTGTTTACCGGATTATTAGAAGGTA 3595487 37 100.0 35 ..................................... GATAAGCTACCTGCTCAAAACACAATTCAAGTTAC 3595559 37 100.0 37 ..................................... CTACTTGCATCTGTCACCAATGTCCTAAGCATATTCG 3595633 37 100.0 36 ..................................... AACCAGAATACGGTTACATACCAGTTGACTAATGAA 3595706 37 100.0 35 ..................................... ATTACTTTCTGATACCTCATATCACGCGCAAGATT 3595778 37 100.0 35 ..................................... CAAACAGTTCTTTCGCACCTTTTGAAGATGGAATG 3595850 37 100.0 36 ..................................... CTTGGTGGTGGTGACTTCAAAAAATCGGTTATTGAT 3595923 37 100.0 36 ..................................... AAAAATTAAAAGACTTTGCTTATCAAGAATATGGTA 3595996 37 100.0 35 ..................................... AAAGAAGCTTGGAGAGGAGCAAGAAAAGCTGTAAG 3596068 37 100.0 35 ..................................... ATTCTGCCTGCACATCTGCGTTTGCCGTCCAGTTT 3596140 37 100.0 35 ..................................... TGACTACCCCTTAATTCAAATGATGCTTGATCCTG 3596212 37 100.0 37 ..................................... GATTTACCTGAACCAAAGCCGCCAACAATACCCGTGT 3596286 37 100.0 35 ..................................... TTACTTCATTGGCGATGAAGAGAACTTTGTAAGAT 3596358 37 100.0 37 ..................................... AAAAGTATGTGTAGCTCATTAGTTGAAGTTTTCAGGT 3596432 37 100.0 35 ..................................... CAATCTCTAACCGGATTGAAGCGATTTGAAACCTT 3596504 37 100.0 36 ..................................... TGAAAGTGCCTATGGTTACCCACCGGGCCCAAGCCG 3596577 37 100.0 36 ..................................... TTGTCCGCTTTTTTGCCGGTGGTTTTCTCTTTCACT 3596650 37 100.0 36 ..................................... TGAGTTGGGGACCACTGGATGCAAAAGGGAAGCCGG 3596723 37 100.0 35 ..................................... ATTAAAAATTAACCTTAAAAAAGACCACAAGCACT 3596795 37 100.0 35 ..................................... AAGGACTGATATAAATCAATATAAAAAAGCTCTAA 3596867 37 100.0 36 ..................................... AGAAATGTATGGGCGTTATTACAAACGGATCTCATT 3596940 37 100.0 36 ..................................... AATTAACCGCTTTTGCTGTTATACGGTCCTGCATAG 3597013 37 100.0 36 ..................................... GAAGTTTCGCCTGGTTTCCATAGCGGTGTAAAAACT 3597086 37 100.0 35 ..................................... TGGTTCTGAATGTTGTTAAGTTCTCATCTGTAGGC 3597158 37 100.0 36 ..................................... GCTACTTCACCGTTTGAATAATAGATTTCATTTTTA 3597231 37 100.0 37 ..................................... GGTAACGCTTCCGGTTTCTTCTATGTAAATCTGTGCA 3597305 37 100.0 36 ..................................... GATAATGCTACATGGGATTATGAATTTTGCGGAAGC 3597378 37 100.0 37 ..................................... TTTAAAAAGCAATTTGGAAACAATTGTAGTCGAAAAG 3597452 37 100.0 35 ..................................... GCAAAAACCTTATTTAAGGTGAAATTTGAAGGCGT 3597524 37 100.0 36 ..................................... GTCCACGTTTACCTAACACCGCATATCTTCAAGACG 3597597 37 94.6 35 ...............T..........T.......... CCCTTTACCAGTAGTTTTACTGTTGCCATTTCCCG 3597669 37 91.9 36 .........A......A..............C..... AAATGAAAATAAGAAAGTTGAACAAAAAGACCGGTT 3597742 37 97.3 35 ........................T............ GGGGCGTTTGTAACCGGTTTAAACGACAATTTAAG 3597814 37 94.6 36 .........A................T.......... TGACACCGGAGGAAGCTAAAGAGCTGCGGGAACTAT 3597887 37 97.3 37 T.................................... ACCGCATTGTTATACCCGCTAGCGATCCAGTTTGCAA 3597961 37 91.9 37 ................AC..............A.... AATTGAATGAATACTGCTGTGTAGTACGGCGGGCGGT 3598035 37 91.9 37 ......A.........A...............A.... AATTGAATGAATACTGCTGTGTAGTACGGCGGGCGGT 3598109 37 94.6 35 ......A.........A.................... ACGCTTGCTGTTGTAGTTGTCGGCTCTGTAATGTA 3598181 37 97.3 38 ................A.................... AGACGATCAATTATTAAACCCTCATCATCATTCACTAA 3598256 37 97.3 36 ................A.................... TCAGCCTTCTTTTTTGCGCCTGTGGTAACTGTGGTT 3598329 37 97.3 38 ................A.................... CCATTTGCCGTTTACTTTAACGGTTGGGGCTATGTAGT 3598404 37 97.3 40 ................A.................... GGATTATGGGTTGAAGAGAACAAAGACATCTTGAAACAAT 3598481 37 97.3 35 ................A.................... TCAATACCAAAACCTCTCACCATTTCTTGAAGCTT 3598553 37 97.3 36 ................A.................... CCGTTATGCTTAATTGATTTTGAGTAAACGCCCTCC 3598626 37 97.3 36 ................A.................... ATAGCTTCAGACCATTCTGAATCATTTCTTAAGTTT 3598699 37 97.3 36 ................A.................... CTCACTAGGCCGCCTTGCTCCAGATCAAAATAAGCA 3598772 37 97.3 35 ................A.................... TTAGGGTTGGTGATGGGTTTGGATATATGGGAGTT 3598844 37 97.3 36 ................A.................... GGGCTTTGGTTTTTAGCAATTATTCTCAAATAAGGG 3598917 37 97.3 35 ................A.................... TAGTGTACCGAGATTCTAAACAACAAACGGTATAT 3598989 37 97.3 36 ................A.................... TTATTACTTGTAGTCGTATTTACTTTTCCTATCATA 3599062 37 97.3 36 ................A.................... ACGAGATAATAACAGAGATTGAAAACGAACTTAAAG 3599135 37 97.3 36 ................A.................... TAGAATACCCGTGGACATATGCCGATTGTGCACAGT 3599208 37 97.3 35 ................A.................... ACCGGTATTACGCTTACTTATACCTTGCTGAGGTT 3599280 37 97.3 36 ................A.................... ACGTACTTTAGTTTCTCAGCTTCAGTAAGTGAAGAA 3599353 37 97.3 37 ................A.................... TAGATCGTTCTAATTCGCTGCGCATACGGGTGGTGAT 3599427 37 97.3 36 ................A.................... TTAGAAACTTTCTCAAGCTCCTTAAGCGCAGATTTA 3599500 37 97.3 36 ................A.................... ACACTTTGCGCGCTTGCGGGATCTCTTTTGACGAAC 3599573 37 97.3 36 ................A.................... AATTCTGCGTGTGACTGGTCCTGTTTGATGATGAGT 3599646 37 97.3 35 ................A.................... TAGTAGTCGGCATTCAATGAAAGCCCGCTATTTAT 3599718 37 97.3 36 ................A.................... ACCTTTGGTGATGCATACCGTACAGAAGAGCAGCAG 3599791 37 97.3 36 ................A.................... ATGATGAGGAAGCGTGGTTTTCAAAGGATAAAAAGG 3599864 37 97.3 35 ................A.................... TGGACCGTGCGCGCAAAGCGACCGTGCCGGGAGCG 3599936 37 97.3 35 ................A.................... TCGTTAACATCAACAGCCAACAGTTTTTCTTCCGC 3600008 37 97.3 36 ................A.................... CGGCAATTTTTTCTTGATCAATTAAAGCAGCCTCAT 3600081 37 97.3 35 ................A.................... AAACCTCATCATTCGCATTAAATGAATAATCGCGG 3600153 37 97.3 35 ................A.................... AATACATCATAATCATCTTCATATAAAGGGTACAT 3600225 37 97.3 36 ................A.................... ACCTAAACAACATATCGCCCCTTGAGTTCTTGAGAC 3600298 37 97.3 35 ................A.................... GCCGTGCGCTGAAGTTGTCATAATCATTATAGATC 3600370 37 94.6 37 .........C......A.................... GTGAGTTCATTAACCCAGTTATTAAAAGCTCTTAAAA 3600444 37 94.6 36 ................A...A................ AAGCCCTCAGACCTTTTAAAACAGACTGAAAAACGA 3600517 37 94.6 36 ................A......G............. CCGTAATGATAAAATCAAAAAGCATCAAGAGCAATT 3600590 37 97.3 34 ................A.................... AAGCCCTTACCCTGAGGAGCAACAGGCTTTTCTG 3600661 37 78.4 0 ........CC......A.......TC.A....T...T | ========== ====== ====== ====== ===================================== ======================================== ================== 102 37 98.4 36 CTTCCAGATGCATCCATTTAGAAACTAGGATTGAAAC # Left flank : CGCCCCTCTGGATTATAAGTTTGCGGTTTGGAAAGACAGGGTATTTGAGACCTATAAACAACAGCTTTACTGTTATGCCTTATTGATTGAAGAAACTTTTGGAGCCAATGTCAATAAAGGCTTTTTGGTTTACACACGTAGCAAACATAAATTGGTAGAAATACCTATTAACCAAACTTCAAAAAATGAAGTGATGGAAAGCACGGAGAAAATGCTTGAAATCATTGAAAGGAATAAATTCCCTAAAGCGACGACATATAAAAAAAGATGTTTAAATTGTACCTACAGAAATATCTGCATAAAGTAGGTTTTCCGGGTAACAATTTATTTTAACAACGACTAAAATAAGCATCTATGTCAGGCTATTGTGGACTTCAGCAATACGGAACTGTATTGAAAATGACTATAAAAGCGTTCTTTGACATATTGAAAATTAAGAAAGTAAAAGTTGAAGAATTAAGCTTAAGCATTATAGACAGTAAACATCTGGAGGTTATCGG # Right flank : TTACCGTCCTTATCCTATCAGTGTTCATGTAAATCTTTCAATTTTAACCAATAAAAATTATAGATAATTTTTGATTTAGTCCATTACTCTCGCAGACGGTAAACGAAGGGTATTAGTCAGGAAATAGCTGTAACTGCTAACTCGAACAGCGCCGGGATAAGTACCCTGAAAAATAAAGAGGCTTTCCTGAGTAATCAGGCAGCCTCTTCTAGTTTTACAATTCGTAAATAAGAATAAATATTTAAAAAGTATTTGTTTTCCTTTAGAGTGAATACTATTGCCCCACCAATTGAATTCAAATGGAGATTCTCTGATTCGCTAAATCATCTGATAATTTTTAAATTAGAAATTGGCCGTTTAGGTGTTTTACTTTTGGATTGCAAAACTTCTTGAAGTTTGTTCATATCCTCTTCTACTTTTTTGTCTAAAACACGGGCATAGATCTGTGTAGTTGCTATTTTGGTATGTCCTAAAAGCTTAGAAACGGTTTCTATGGGCAT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGATGCATCCATTTAGAAACTAGGATTGAAAC # Alternate repeat : CTTCCAGATGCATCCAATTAGAAACTAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //