Array 1 334574-333171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVME010000004.1 Acinetobacter baumannii strain ACIN00181 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 334573 28 100.0 32 ............................ TGAATTTTTAATCCATTGATATTCGAGTAAAT 334513 28 100.0 32 ............................ TTCATCTTTAGTAATTTGCTCGATGTACTTGT 334453 28 100.0 32 ............................ AACCCTCGCCCGCAACAGTAGTTGCATTAGCT 334393 28 100.0 32 ............................ TCATCAATAAAAATAACTGATGTTTCTGGTGT 334333 28 100.0 32 ............................ AATTCGACTGCAAATAAACTAAATGAAGTTGT 334273 28 100.0 32 ............................ AAAGGCACCAAGCAAATCGGGAGCTGAGGGAT 334213 28 100.0 32 ............................ TTCACTGTCTTTAGTGCGAGAAGTCCAGTAGA 334153 28 100.0 32 ............................ TACATAGCCTTCTTTATACTGTTTAGCAATTT 334093 28 100.0 32 ............................ ATATAGTTTGATAAGTCATGTCCATCAAGAAC 334033 28 100.0 32 ............................ TGTTCAGTGTAGGCAACATATCTACCGTTTTT 333973 28 100.0 32 ............................ ATGGTTTTACCCCTTGTTAAACATATCGCTAA 333913 28 100.0 32 ............................ TGACGCACCGAAAACTGGCGAGAAATACTTAC 333853 28 100.0 32 ............................ AGGCTACAAACCAGTGCCTTACATGGGTGCAA 333793 28 100.0 32 ............................ AAAACCATGATTCTGTTGTTTAGGAGCGAATA 333733 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 333673 28 100.0 32 ............................ TCTGAATATGCCGCGTGGTATGCATGGTGCTT 333613 28 100.0 32 ............................ TTAATTTCATTAATCGTTAGAGAGTTAATATC 333553 28 100.0 32 ............................ CATGTGAAATTAACAAAGTCACTAGACACCCC 333493 28 100.0 32 ............................ TCAACCTGTGCAATCACTCTTATTCACTTATC 333433 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 333373 28 82.1 27 ....C......TCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 333318 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 333258 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 333197 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 97.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTGAGATAAGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGACCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 339664-343532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVME010000004.1 Acinetobacter baumannii strain ACIN00181 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 339664 29 96.6 31 ............................A TCACCAGAACCTGTGCCAGTGCCAGAACCAC 339724 29 96.6 31 ............................C AATAAACCCTTTGACGTTGACCAATCGCAAA 339784 29 100.0 31 ............................. TCAGGCAGCAAATGCGACTACTGTTGCGGGT 339844 29 100.0 31 ............................. TTTTGAACTTGAGCATTTTCAATGATTGTTT 339904 29 100.0 31 ............................. TGCCAATGTATGAAAGACCGCGCAGCTCTGT 339964 29 96.6 31 ............................G AATGCACGAATAGCTACAGACATTAGTTTTA 340024 29 96.6 31 ............................A TTGAGATAACGGAACCGTCATAGACCCATAA 340084 29 96.6 31 ............................C AAAATCCTGAAAAACGTAACGCTGAGCTACA 340144 29 96.6 31 ............................G CCACCACCGCCTACAGGCTTATTATTAATAG 340204 29 96.6 31 ............................G TTGCAGGTTGAGGAAAAGAAAGCGACTGATA 340264 29 96.6 31 ............................C GTCTATCCGCCAAGATCTCGGGGCTTTTTGC 340324 29 96.6 31 ............................A AAATCCGCCAATTTCTGGATTATCAGTTTCA 340384 29 100.0 31 ............................. AACTTTTGATCGATCTTGATGGCATCAAATA 340444 29 96.6 31 ............................A GGCTATGAAATGACTGTTTCAAGTGATTTAA 340504 29 96.6 31 ............................C GTCAGCAGCAAATGCCATTGGTGTTGTATCA 340564 29 100.0 31 ............................. CCAAGCCAACCTCGCAAGTGGGTGCAGTACC 340624 29 100.0 31 ............................. GAACCTCATCAATAAAAATAACTGATGTTTC 340684 29 96.6 31 ............................A TGCCACACTTTTAAGTGTCTCATCAACTGAT 340744 29 96.6 31 ............................A CTGCAATGCAGCGGCAAGCAAAGCAGCAAAA 340804 29 100.0 31 ............................. GATTCTATTATTTTGAATCATGAAAATAATC 340864 29 100.0 31 ............................. TCACGGATCGTTACGCTATGGTGATCACATT 340924 29 96.6 31 ............................C ACCATTGCCGTACGGCGGATTCATCACAATC 340984 29 100.0 31 ............................. TCAAGGGCACAATGTTTATGGGTCAGATTGG 341044 29 100.0 31 ............................. GTACTCACAGAAGCAGTCCGATTTTGTGTTT 341104 29 100.0 31 ............................. AAAGCAGTTCGCTTGGCATATACAGAACATA 341164 29 100.0 31 ............................. AGACACTCTCAATTAAAACATTAACAAAAAA 341224 29 100.0 31 ............................. CAAAACCATGTACTTCAAGGTTTGTATAGAA 341284 29 100.0 31 ............................. TAATGCGCAGACTAGATGCATTGTTCTGCTC 341344 29 96.6 31 ............................A GATGAAATAAGACCGGTATTAAAATTCTGAT 341404 29 96.6 31 ............................C CAAGCTGTGAATGTTGGTAATGCTTTAAGCG 341464 29 96.6 31 ............................A GTATCGCAATTTAATTATCAAATCGCATAGG 341524 29 96.6 31 ............................A TCCTCAATCAACCTCTTACAGTCAGATGGAT 341584 29 100.0 31 ............................. TTTGGAGAACTAAACAACGTAAACCAGAAAA 341644 29 96.6 31 ............................A TCATCCCGCCAGACAGGATAATCATCCGGTC 341704 29 100.0 31 ............................. GGTAAAAGTGAGCGTAAAAGCTCTGTTGCAT 341764 29 96.6 31 ............................A ATGAGCTTTCTGACGTTCCTCGTTGAACATA 341824 29 100.0 31 ............................. TTGTGACATTTACAGTTGCTACGCTTGGACG 341884 29 96.6 31 ............................A ACTGTGGTAAAACTTTTGCGATTTGATCTTG 341944 29 96.6 31 ............................A TCATTCGTTGGCAAAACAGATGTGCCTTTAA 342004 29 100.0 31 ............................. TATTGTATAAATTGGCTGCAACATCCTTACC 342064 29 96.6 31 ............................A CCTACTGCCCACCGTGCATCAGAACCATCTA 342124 29 96.6 31 ............................A CACCAGCATCTCGCAATATGCCTTAGTTGCA 342184 29 100.0 31 ............................. CTACTTCTTCACGTTGCAACACATCCCATGC 342244 29 96.6 31 ............................A ATGCTGTCGCTTTGCTTCATAAGGTGCCAAT 342304 29 96.6 31 ............................A ATCTGGACGGATACGACATTCAAGACCTGTT 342364 29 100.0 31 ............................. TAAGGGGTCAAACTATGAAATTAACCGATGA 342424 29 100.0 31 ............................. AAAAAACGTGGCGAGGAGCGCACTACCGTAC 342484 29 100.0 31 ............................. TTTTATGAGCCTCATCCGCAAGTTTAACATT 342544 29 96.6 31 ............................A TTAATTTCCCAAATTTGGGACTAGAGTCCAC 342604 29 96.6 31 ............................G GAGTGGATCGCTGAGCAGCTTGGCCATAGTG 342664 29 100.0 31 ............................. CATAAGGGCGATTAGGATTGTATTTGATTGC 342724 29 96.6 31 ............................C ATGGTTTTTACCCCTTTTTAAACATGTCGCT 342784 29 100.0 31 ............................. GAATAGCAAGTAAATGACTACCGTCATTAAG 342844 29 96.6 31 ............................A AGCAGCAGCTTGGTTACTTCCATTATCCGCT 342904 29 96.6 31 ............................C AAGCCGATTAATGGGATGATGTTGACAAGCC 342964 29 96.6 31 ............................A GTAAAACTAAATACAGCACCAAAAGTTAAAG 343024 29 96.6 31 ............................A ACCAGTTCAACATTATGACGCTGAATTTGTC 343084 29 96.6 31 ............................A AAGCAGCCATTTTTATAATCATCTTCAAGCC 343144 29 96.6 31 ............................A AAGACAGGAGCATCACCTGTTGCACCTAAAG 343204 29 100.0 31 ............................. GCATATATAAATGCGAATGGCGAATGGTGAA 343264 29 96.6 31 ............................A AGTGCCACGTTGCTTATCAAACGTGCAATTC 343324 29 96.6 31 ............................A GCATAGTGAGCTATTGCAGCCGCTTTAGAGT 343384 29 100.0 31 ............................. GCAAATAATCGCGTAAAATATTATCCGGACC 343444 29 96.6 31 ............................A AAATTGACTAAGTATTTAATTTTATTGGCTT 343504 29 93.1 0 ........................AT... | ========== ====== ====== ====== ============================= =============================== ================== 65 29 97.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAATAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //