Array 1 1332-2948 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAV01000316.1 Escherichia coli strain ECOR15 ECOR15_contig_81_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1332 29 100.0 32 ............................. CTGGCAATGGATCGTATGAATCTTGCGATAGA 1393 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1454 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 1515 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 1576 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC 1637 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1698 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG 1759 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 1820 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 1882 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 1943 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 2004 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 2065 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 2126 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 2187 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 2248 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2309 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 2371 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 2432 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 2493 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 2554 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 2615 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 2676 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 2737 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 2798 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 2859 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 2920 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78903-78081 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAV01000278.1 Escherichia coli strain ECOR15 ECOR15_contig_47_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78902 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 78841 29 100.0 32 ............................. TGGCTGAGTACTTCGGCAAACGACACGGCGAT 78780 29 100.0 32 ............................. TGTTTTCCTGCAATAAAACGACGCTCGTTACG 78719 29 100.0 32 ............................. CTTTCCATGTACTCATCCTTACGATATCCAAC 78658 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 78597 29 100.0 32 ............................. CGAGCGCAACACGGCCATATTATTACCCCATT 78536 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 78475 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 78414 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 78353 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 78292 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 78231 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 78170 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 78109 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGGTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //