Array 1 286492-287491 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VTIL01000004.1 Listeria monocytogenes strain FSL L7-0629 NODE_4_length_298613_cov_36.570836, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    286492	    29	  93.1	    35	..........T...T..............	ACCAATCTCTTGCTTCACTTTCAATTTTTGCTTTA  	
    286556	    29	  93.1	    35	..........T...T..............	TCTGATACTTTACCTTTGTCCCTAATGATTGTATT  	
    286620	    29	  93.1	    37	..........T...T..............	GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC	
    286686	    29	  96.6	    36	..............T..............	TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 	
    286751	    29	 100.0	    37	.............................	TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA	
    286817	    29	  93.1	    36	..............T...A..........	TTTAACGTTGGCCCAACATTTTTATCTGAGAAGGGG 	
    286882	    29	  93.1	    35	..............T...A..........	TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC  	
    286946	    29	  93.1	    36	A..............C.............	GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 	
    287011	    29	  93.1	    35	..........A...T..............	ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT  	
    287075	    29	  93.1	    36	.........G....T..............	AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 	
    287140	    29	 100.0	    34	.............................	GTGTACTCTAATGCCAAATTTAATTCCTCCTATT   	
    287203	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA 	
    287268	    29	  93.1	    36	..........A...T..............	AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 	
    287333	    29	  96.6	    36	..............T..............	AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 	
    287398	    29	 100.0	    36	.............................	GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 	
    287463	    29	  75.9	     0	T.....A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        16	    29	  94.2	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAATAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCTCCTCCATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACCTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTTCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTC

# Questionable array : NO	 Score: 5.34
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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