Array 1 2727603-2729665 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZG01000001.1 Pectobacterium parmentieri strain IFB5626 IFB5626_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2727603 28 100.0 33 ............................ CGCAGGAAGAATCTTTTATAACATAAACAGAAT 2727664 28 100.0 32 ............................ TTAACTTCATCGAGCACGCCCAGCAGTTTAGC 2727724 28 100.0 32 ............................ CTAAGCACGGCTATTAATTGCCTTATTCCAAT 2727784 28 100.0 32 ............................ TCTGAAACGCTAAACGGCGTAACGTGCACTAA 2727844 28 100.0 32 ............................ TTAGCGACTGCAACGCTAATTAATAATAGGAT 2727904 28 100.0 32 ............................ GTTAACAGTAAATTCACCGTCACGGTAATAGT 2727964 28 100.0 32 ............................ TTCCACGTGACCCAATATAGAACTATCAGAGT 2728024 28 100.0 32 ............................ TATGCTAACGGCGCTCGTACTCTCTTGGATTT 2728084 28 100.0 32 ............................ AGTGCTGGATGACGTCACGCTCGACGTTATTC 2728144 28 100.0 32 ............................ GTATATGATGACCATAAAGGCGTGTTAGAAGT 2728204 28 100.0 32 ............................ ACGGGTCGTATGCAAATTCGTTAAGTGAGTCG 2728264 28 100.0 32 ............................ GACATGCAAACCCGTCAGCGTGAAGTTGCTGC 2728324 28 100.0 32 ............................ ACCGTTTCCCAGGCTGTTATGCAGTTAATTAA 2728384 28 100.0 32 ............................ ATAACGGCATGTGCCAGATCAACGGCATCTGA 2728444 28 100.0 32 ............................ TTGGGCAATGGGCAGTGCGCCCGTTGCTCGTC 2728504 28 100.0 25 ............................ TAGCGCCCCGCTGCCTGCACTAAAG Deletion [2728557] 2728557 28 100.0 32 ............................ GCTCATCACTGCGCCGTGTGCGTGTTTATCAA 2728617 28 100.0 32 ............................ ATCACCCTCTACCGCCGCCGCGACACGCACCA 2728677 28 100.0 32 ............................ GTTTATCTCGACGGGCATTGTATCCTTTGTAT 2728737 28 100.0 32 ............................ TCTTACGCGTGAGGCATACATTGATATCCTAT 2728797 28 100.0 32 ............................ ACAGTCTAGTACTGACCTCTCCGGTTGAAATG 2728857 28 100.0 32 ............................ CTCTTTCGACCACACTGAATACGCCAGCGATG 2728917 28 100.0 32 ............................ GGCTGCGTTCTCCGATACCAGATGACCTGAAT 2728977 28 100.0 32 ............................ AAGGTGCGAAAGCCACAGCGTCATGAAACCAA 2729037 28 100.0 32 ............................ TTTTGAGGCCAATCACATTCTGAAGCTTAAAT 2729097 28 100.0 32 ............................ AGCGCAGAACCACCCACGCTAACCCGCGAATC 2729157 28 100.0 32 ............................ ATAAATTACGCCGGTTTGAGTCCTGACAAAAA 2729217 28 100.0 32 ............................ ACGGATGACCGAGTGACCGGCGACGAATACCA 2729277 28 100.0 32 ............................ GAGAGCGGAACGATGTGATCCACCGCCCTGTC 2729337 28 100.0 32 ............................ AGTCGGCTCAATTGGCACCAGCGCCCAACCTT 2729397 28 100.0 32 ............................ TTGCCTACATACCATAAATTACGTCTAGCTGA 2729457 28 100.0 32 ............................ CGGTAAGCAGATAAAAATTTATGGCGGAAAGG 2729517 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 2729577 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 2729637 28 85.7 0 A...........GC..........A... | G [2729662] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCGCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2746881-2748474 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZG01000001.1 Pectobacterium parmentieri strain IFB5626 IFB5626_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2746881 28 100.0 32 ............................ AGCTAAACGCGGCGGTGTACTCCGCTATCGAA 2746941 28 100.0 32 ............................ CTGTATAAACATACATACCCCTAAAAGCTCCT 2747001 28 100.0 33 ............................ CACTGCAAATTATCCGCTTTCAGGTTTCGCAGG 2747062 28 100.0 32 ............................ GCGTTTAGCTGGTGGAACAATTTAGCGTTAGC 2747122 28 100.0 32 ............................ TCATTCAACGTGCTTGACTATGCCCTGCGTGT 2747182 28 100.0 33 ............................ TAGAGGAAGATTCTAGCCTTTTAGATATCTTGG 2747243 28 100.0 32 ............................ AGCAGAAAGCAGGGCAAGCGGCAGAAACTCGT 2747303 28 100.0 32 ............................ TTCATACGCATCATTGAAGCTGTGCAGGGCAA 2747363 28 100.0 33 ............................ TAGATAATAGGGGCTTATTCTTTGTTGAGGTTA 2747424 28 100.0 32 ............................ TAAAGTCGGGCAATCTGTTTACGTGCCTTTCG 2747484 28 100.0 32 ............................ ATAGCAAAATCTAACGCCCGCGCATCCATAAA 2747544 28 100.0 33 ............................ CTACAGTAGTATCACTGTAGCAACCATCGCCCC 2747605 28 100.0 32 ............................ ATGATGACGAGGCAATTTTTCTTGCGCAGCTC 2747665 28 100.0 32 ............................ TGGGTAATGGTCGCTGTCACGGTCGCCTCCGT 2747725 28 100.0 32 ............................ CACAATTCCAATTCATCCATGATGTGCATGAT 2747785 28 100.0 33 ............................ TCATTATATAATCACTATCCGTGAATTTCATGT 2747846 28 100.0 32 ............................ ATGTAAGCGCTAACAATGTTATGGTGCGCTAT 2747906 28 100.0 32 ............................ GTTATCAATATTTATTCCGATGGCGCATTCAC 2747966 28 96.4 33 .............T.............. CGCCGCCCGATACTGACGTTGCGCCGCTTTCGT 2748027 28 96.4 32 .............T.............. GCTGATTAACGATAAGTGGATGGAATTTCTGA 2748087 28 96.4 32 .............T.............. GTGGAGGGCGGGTTTTACGGGTCGCTAATTGC 2748147 28 96.4 32 .............T.............. GTGCACCGAATGTGGCTGTCGTGAAACTCGGC 2748207 28 100.0 32 ............................ GTTAAATTCCAGCGTTTGGTATTGGGCAATCA 2748267 28 100.0 32 ............................ AGCCACCTCTGCCAGTTTTCCGTACAGCGTGA 2748327 28 96.4 32 ..C......................... AGAATGGAGCCAATCACGTTTCAGTACAATAT 2748387 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 2748447 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGTTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4236412-4237478 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZG01000001.1 Pectobacterium parmentieri strain IFB5626 IFB5626_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4236412 29 100.0 32 ............................. CGCTCGGCAGCAGCAGGCTCTATATGCTGGAC 4236473 29 100.0 32 ............................. GCGCATCGCAAGGTCGAAGTCTGATTTAGTGT 4236534 29 100.0 32 ............................. CAGTTGGGCCTCAAGTCTGGAGGGGATGAATC 4236595 29 100.0 32 ............................. GACATGGAGAACATCAAGAACCTTGTTTGGAT 4236656 29 100.0 32 ............................. AGACTGCTTAACTCTGCTGCCGTCTGGCGCTG 4236717 29 100.0 32 ............................. AGCGGCACCGATTTGCCCTGACATTGACGTGT 4236778 29 100.0 32 ............................. GTTCGTGGATCATTCGCCACTGGTGGATACCT 4236839 29 100.0 32 ............................. ATCGCAAATAAGCCCAATAGGTCGATTCATTG 4236900 29 100.0 32 ............................. AAATCGTTATCAGGGACGCCCATGTTTACGGA 4236961 29 96.6 32 ............................T GGTTTAATGGCGAATCGGTGCCAAGAAAGGAG 4237022 29 100.0 32 ............................. GCTGCAACTGAGTTTGCAGATCAAAGAAACTT 4237083 29 100.0 32 ............................. CCTCCGAAGAGGCTATTCATCTGGTTTTAATT 4237144 29 100.0 32 ............................. TCGTATGTATCGATCGCTGATAACAACACGTC 4237205 29 100.0 32 ............................. GGGGCTGGTGTGTTTGGAGAGGCGGGGCCAGA 4237266 29 100.0 32 ............................. GTTAGATAGCTCTCTCGTAACGGAGGTGATCG 4237327 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 4237389 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 4237450 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4239348-4240047 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSZG01000001.1 Pectobacterium parmentieri strain IFB5626 IFB5626_ctg0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4239348 29 100.0 32 ............................. CCCTCTCCGGAGGGTTTTTTTACGTCTGGAGA 4239409 29 100.0 32 ............................. GAAATCAGAGCCCTTGGTGGAGATGGGAGCGC 4239470 29 100.0 32 ............................. CAGGTTCGCGGTTTGCAAGAATACGTCCGCGA 4239531 29 100.0 32 ............................. CGCGATCCTGCCGTTCAGGTAATGTCCTACCG 4239592 29 100.0 32 ............................. GGCGCTAGACTGGCTAAGACTGGATTCATCAA 4239653 29 100.0 32 ............................. GTTTTTTTGATCTCTCGGAATCTACCAATGCA 4239714 29 100.0 32 ............................. TCCTGTTGAGTTAACGCTATGGATTTAACTGA 4239775 29 100.0 32 ............................. GAACATCATCCAACCATATTTTTTGGCGATAT 4239836 29 100.0 32 ............................. CATGAAAGACAGATACCGTGATTTATCTAGAA 4239897 29 100.0 32 ............................. GGCGGAAAAGCCGCATTGCCGTGGCAAGTTGC 4239958 29 100.0 32 ............................. TTATTGAATGTTGTGATTGCCGGAATCAGATC 4240019 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGAGTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //