Array 1 200814-198854 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDQ01000011.1 Bifidobacterium longum strain DPC6317 contig0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 200813 33 97.0 33 ................................T GCTAGTTTGCCGGTGTTGATATCGGCTATTTGA 200747 33 97.0 34 ................................T TTGAGGTCGGCGGTTTGAAGACTGTTGATGACCC 200680 33 97.0 33 ................................C ATTGCGCGACCTTTACCACCGCGCACCTCGCCA 200614 33 100.0 32 ................................. TTACGTCTTGCGCCTGAGTGCCATAGATACCG 200549 33 100.0 32 ................................. TGACAGCCTCCAATCGTTTGTCAGGCGAAATG 200484 33 100.0 33 ................................. ACAGCGAGTAGACGGTATTGTAGCGTGTCCCGT 200418 33 97.0 34 ................................G GCTTAACGGTGTCGCCAATACGATATTCGACAGC 200351 33 97.0 34 ................................C AGCTCAAACTCGCCATGTACGGCGGTGGCGCGAC 200284 33 97.0 35 ................................G GCTTCGGACAGTTGGGCCTCCTTGAGCTGTTGCAG 200216 33 97.0 36 ................................C CCAACCACCCGCACGGGTGGTTTTTTATGCCCGAAA 200147 33 97.0 34 ................................T TAACATCGGTTTTCCGCGCAAAAAGCATATTGGA 200080 33 97.0 33 ................................C GTGATTTTAATAATTTGATGACGAGGAACAATG 200014 33 100.0 34 ................................. AAGGCTCCACCACACAAAAGGTTGACTCGTGGGA 199947 33 97.0 35 ................................T GGTCGGATGCGCTGCAACCGGGCCTCGACCTTGAT 199879 33 97.0 33 ................................C GGTCAGGCGGGACTCTGCTACTGGGATTCGGTC 199813 33 97.0 32 ................................T CCTTCTTAGGACGTTAGGCGTTATCCAGCCCA 199748 33 97.0 33 ................................T TGTGCAGCAATGCGCGACGGTTGGAATTGGAGA 199682 33 97.0 33 ................................T CAGACGGGGCAGAAATGCGTAAACGTCTATCTT 199616 33 100.0 35 ................................. TCTATCTACGCAGGACGGCGGAGGAACAGAAGAAC 199548 33 100.0 34 ................................. GTGTCGTCAACAATGGCGGCGCACTGGCTATGGC 199481 33 97.0 34 ................................T TACACCTGATTGTTGCAATAAGCCGCCAAGTATC 199414 33 97.0 33 ................................T CGTACTTGCTGGTCTGTGGGCGTACCGTGGCCA 199348 33 97.0 32 ................................G CCGGGTCGGTGATGCTCGCCTTGTCGACGGTC 199283 33 100.0 34 ................................. ACATCTGTAAGCGGCGTCCGAAACTCCATTGCGC 199216 33 97.0 33 ................................C CGACCGTAGCGGTTGATGTAATCCTGTGGGATT 199150 33 100.0 33 ................................. GGTCATGCAGCATTCTGTTGGCGCTCTCGTATC 199084 33 100.0 33 ................................. TCCAACACAGGGTAGTAGTCCTTGATAATCATG 199018 33 100.0 32 ................................. AACATCGCTGGCGGGCCGCCGCGAGGGCGGTC 198953 33 100.0 34 ................................. CCCCATATCCTACACGGGGCGAAGCCATACCCGA 198886 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 98.1 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : GGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGTGCCGCATACACGAATCGCCACGACTGAAACCGGGTCAAGACCTATCGAGAACATGAGTCTTGGCATGGCTATCAAGCTGTGTGACGCGCTCAGGGTATCTAATCCGCGCAAGCTGTTAGAGGCTGATAAGCCGAAAGAAAGCGCCGCCAAGTAGGCGGGCGCGTGCCCTAATCAATTCTTCGCCCGACTGTAGGCGTTGTGTGCAGTCGGCCTAAACTCACTGGGTTCACCCCATAGTCTAGGCACTCATGGCGTGTCCCAAGGTGGACGGGATACGCTGAAGTCAATTTTGAAAGTGAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 499430-499774 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDQ01000011.1 Bifidobacterium longum strain DPC6317 contig0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 499430 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 499496 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [499502] 499580 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 499640 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [499688] 499688 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 499745 27 81.5 0 C.............C.....C....CG | GC,C [499762,499766] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTGCG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //