Array 1 816703-816078 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBWW01000001.1 Leptolyngbya sp. NIES-2104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 816702 37 100.0 36 ..................................... ACATGACGATCGTGCAAAAAGTTGCCAAACAACTGA 816629 37 100.0 38 ..................................... GCATTAGTGCTAACGCTCTTTTAATCAATAATTCCAGT 816554 37 100.0 37 ..................................... GAAGTTTCATAGAGTTGATTCCAAAGTTGAAAGATGA 816480 37 100.0 35 ..................................... TATCCTCAGAAAACCTCGTGTCATCCCTGCTTTGA 816408 37 100.0 36 ..................................... TTATCTAATGACCCGGGAACATAAACGATACAATTA 816335 37 100.0 38 ..................................... TAAACCTTCAAGATTAGTAGCCGCTCTTACCAGGTTGC 816260 37 100.0 35 ..................................... GTCCCCGTGACATATCGTAAGACTGATCCCACGAT 816188 37 100.0 37 ..................................... CTACCCTACACTCTACTTCTCTTCCTATTGCGACTGC 816114 37 94.6 0 ...................T.......A......... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.4 37 CGATCAGAACCTTTAATCCCGGCAACGGGACTGAAAC # Left flank : TCACACCCCACACCATGTTTTACCTAATCATCTATGATTTGCCGGATAGTAAGGCGGCGAATAAGCGGCGGACTCGGCTGCATAAGTTGTTGTCGGGATATGGGACTTGGACGCAGTACAGCGTGTTTGAGTGTTTTTTGACGGCAGTGCAGTTTGCGAAGCTTCAGGTGCAGGTGGAGAAGTTGATCAAGTCAGATGAGGATGCGGTGAGGATTTATGTGCTGGATGCGGGGGCGGTGAAAAGGACGATCGCGTATGGGTCGGAAAAGCCGCGTCAAGTTTCAGCGATCGTTCTATAATGACGGAAGATTTTGGCAAACCGAAGCGGGGGCGAAAACCCTGGGAGGTTCGCCAAATCGCTAGAACCAAGACAACTCAATAGTTTTCACGATCTAAAAAATCGCCATCATTGTAGAATAAAGGCTGGGATCACGGTTTCAGATGACCTTTGCCAAAATTGGTTCTACAGCCCTTGTTCAGTAAGGGTTCTAGGTGGCGCG # Right flank : CGCTCTCTAAGCGTAAAACGATCGCTATAGATCAAATCACCAAACTCCGATCGCAAAAGCAAGTCTCAGGACATAATCCAGGCTTTCCTAATCTGCCTGATCCAACACTCGGATGTGTAGAACCTCATTGCTTATTAGTGGTTCAGTCTGAGACTTCGACACTACTGATGGAAGCCCGATCGTAACTTCTTCCGAATATCTCTCCACCTTTGCCCGAACAAGTTGCGAACTTCGTCGGTGATAGAGTTGCATTACACAATAGACTGCGATCGCATCCAGAAGAACAAAGGAAGCGATCGCAGGATAGAGCAGTCTTTCAAACGAAGCCTAAAGCTAGAAGTGATGCAAACCAGAATCCAGGATTGGAGGAAAAGTTAGCTCAACTCAGTGAATTAGGCACTTGTTCTGTCTTTCCATCTGAATCAGGAACAGAGCCAGATTGCAGCAAATTTAGAATTTGATCGAGCTTCTTGCTCAACTGATCATTCTCAGTTTCTAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATCAGAACCTTTAATCCCGGCAACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 831132-828532 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBWW01000001.1 Leptolyngbya sp. NIES-2104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 831131 37 100.0 36 ..................................... CCACGGTCGGAATGCCGTTCTGAATGAAGAGAAAGC 831058 37 100.0 35 ..................................... CCTGAGAGTCTTTCACCACTGTTTAGCCTGCGGAT 830986 37 100.0 37 ..................................... GATGGGGGAAGCATTGTAAATCGACTGTACATAGTTG 830912 37 100.0 35 ..................................... AGAAGATGATTGCTCAAATATCCGATTGGCAGCGC 830840 37 100.0 35 ..................................... TTTATCAATTTGGGATTCTTGTATTCTGTTTCCGC 830768 37 100.0 35 ..................................... CTTGGCACTGCTCACGAGTAGCGCGGGTGCAACAG 830696 37 100.0 36 ..................................... TGTTGGTATCGTAGCGAGGCGTAATTATTGATTAAT 830623 37 100.0 35 ..................................... AGGTGCAATTAACACGAATGACGAGGAAGAATCGG 830551 37 100.0 35 ..................................... TTCAGAATATCCGGTATTTGAGTCTTGATCAATTT 830479 37 100.0 35 ..................................... GTCCTCATATTTTCGGTCTGTTTTTCTAACTTTTC 830407 37 100.0 36 ..................................... TCTTATATTGCATCCAGACCGAAAGAGCGATCGCGT 830334 37 100.0 37 ..................................... CCGGTGGTGGATATGGCGGATTCCCTACGTTTTTTAC 830260 37 100.0 36 ..................................... GATCGGAGCGGGTGAAGGTGACGGATTTGGAGTCGG 830187 37 100.0 37 ..................................... TGTATGCGGTTTTGTGGACGATCGGGGAAATTCTGAA 830113 37 100.0 35 ..................................... AGTAGAGAATTCGGTTTTTCATCCTGAATCAATCG 830041 37 100.0 38 ..................................... GTTTCCTGAAGCAGTTTTGCAGCCAAAACAATTAGGGT 829966 37 100.0 36 ..................................... AAATAATCGTCTTGTTTTCCATAAATCGGATGAGCA 829893 37 100.0 36 ..................................... GTAGGGCTGTCTTGTACAACTGTTACTGATCCGCTA 829820 37 100.0 35 ..................................... GTAAATGGCTCTGTGACGTTTGTTGATCCGCCTAC 829748 37 100.0 39 ..................................... TCGGTTATCGACTCGATTGTATGGCGTGTGTCCTCTCAA 829672 37 100.0 36 ..................................... CTGCGTGTATTCAGGCAATTGGGACGTTGGCAAAAG 829599 37 100.0 35 ..................................... TGATGCGATCGCTCCCCGAATCGGCAATGTATCGA 829527 37 100.0 36 ..................................... GTTTTTTAGTTGCAATCATCGAAGCGATCGTGAGAA 829454 37 100.0 42 ..................................... AGTAGAATCGCCAGATCGAACTAAAACACCCGGATTGATTTC 829375 37 100.0 38 ..................................... CCCATTTATCAATTTGTGATTCTTGTATTCTGTTTCCA 829300 37 100.0 35 ..................................... GACTTGTCCGAAACCATATCTTATCCGTGGGAATT 829228 37 100.0 37 ..................................... TCTATTTCTGTCTTCTAATTTGTTTAATGATGCCAAT 829154 37 100.0 36 ..................................... CGGCATCGCAGACGGAGACAATCCGTTCATGATGAT 829081 37 100.0 35 ..................................... TTCTCAAAAGGTACAATTTTGTGAGTCATGATTTC 829009 37 100.0 37 ..................................... CTAAACAGTTTGTAGAAACTTTAAACACTTTTTTAAT 828935 37 100.0 36 ..................................... TTTTCACAAATTGTGAAAAAGGTTTAACAGGTGGTA 828862 37 100.0 37 ..................................... AGACAGTGAACGCAAAGCCTGAGTTGTTCGGAGTGCC 828788 37 100.0 38 ..................................... TCGTGCTTGTTCTGCAAGTTCTTTAAGTTGACGTTTTA 828713 37 100.0 36 ..................................... ATAGAGGTAATTTTCCCCCTGAGATTGATTGCCAAC 828640 37 100.0 35 ..................................... ATCGAGGCAGGTCAACTGACTTCCGATCAGATGTA 828568 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 36 37 100.0 36 GTTTCAGTCCCGTTGCCGGGATTAAGTGTGTTGATCG # Left flank : TCAAATTGACCATTCAGCTTTGAGCGCTGCAAACCCTCCTCGATTCTGCTAACTTCTTCTTCTAGATCTAATCGGGCACTTCCTGGCGGATTGGCTGAAAGGAACAAAATTTTCATGATATAGTACTGGATTTCAACGTTTTACCAAAAGTCAGCTACATTGGAACTAAGTTCGTTTACTGATTAGCGCTCTACAACAATCTGAATTTGCTTTGTCACCCGCTCTTGTTTTGGGTCAACCGCAACCGTTGTTAAACGCACCCGCACCCGAATTACCGGATTTTGGGGGTCATCAAATGCGTTGTCATCTTCTTTTAACAATTCAAGGTCAATCATTCGAGCCAGTTTAGGACTAGAATTCTCTAGACTTTGCACGATTTGATATTTGGAAATATGCACGAGTCGATCGACCACTTGTTTCGGAGCCGCTGAATCACCGATGAAAAGCAGCGAATTGACGATTCTCAAATCCATAAATCTCATCAAACCTCGCTGTGTTTT # Right flank : TCCGCCACCTAGAACCCCTACTGAACAAGGGCTGTAGAACCGATTTTGGCAAAGGTGGTCTGAAACAGCGATCCCAGCCTTTATTCTACAGCGGTGGCAACTTGACGAATTGCTACAAATATTGAATTGTCTTGGTTCTAGAGATTTGGCGAACCTCCCAGGGTTTTTGACCCCGCTTCGGTTCGTCAGAATCCTGCCTAATCATAAATCGATCGACCAATCCTGTCGAGTTTTTTCTCACTAAATCTCATAGCGATCGCGCATCCCCAAAACTTCCTGTCTCATCAACTCCCGCACACTCTCCGGCGCAATCACCTCGCAATCCTGCCCGTACCGCAAAATCTCCCGAACCAACCAAAACGTACTCGTCACCTGCCGCACCACTCGTCGCACCTGCGGCAACTCCTCATGCCACTCATTCACCACATCGATCGCCGTCTTACTTCGATAGGCAAACGCCAACCCCCGAAACAAATGCAGCTCGACTAAAATCGCCGCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTTGCCGGGATTAAGTGTGTTGATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2270339-2272647 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBWW01000001.1 Leptolyngbya sp. NIES-2104, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2270339 37 100.0 35 ..................................... TAGTTACTTCATGTAGGAGGTTTGAATGTCTGAGA 2270411 37 100.0 35 ..................................... CGAGATCAGTTAAACCATCCCATCCCCGTATTCGT 2270483 37 100.0 36 ..................................... AAATTCCTGTAATCGGGATTTCGATCAAAACTGCTG 2270556 37 100.0 37 ..................................... TCGAGCGATCGAGTTCTTTGTAAAAATCCTGGATCTC 2270630 37 100.0 36 ..................................... TTGTTGTGCCACTCGGTAATGATCCGAGCGTTCTTG 2270703 37 100.0 36 ..................................... AGCCTTATGCGGGCGGTTTAGCGGTTTTGTTTGCTA 2270776 37 100.0 35 ..................................... CTTGAGAAAGCAGTCCCGCCAGTCGATCGCCCTGA 2270848 37 100.0 35 ..................................... CCGATCAACCCAATTCCGTCGATCGATTCTCAAAT 2270920 37 100.0 37 ..................................... TATTTACTACGCCTGAAATCCTTATGCCATATAGATA 2270994 37 100.0 36 ..................................... GACGGACAATGGAGACGCGGTAAAGGCAATGTCGAT 2271067 37 100.0 35 ..................................... CTATGAAAAGTTAGCAAGTGTTTTAGCTGAGCTTG 2271139 37 100.0 41 ..................................... CGATGCAGGATTGCTAACCGAAGCGCCTACCGAATCGGTCA 2271217 37 100.0 36 ..................................... AAAGAAGCACTGGCTTCTAAAGGTATCAGGGATGAC 2271290 37 100.0 37 ..................................... TTCCCATTAGACAATACATCGATTCTTGAGTTTGGAT 2271364 37 100.0 35 ..................................... TTTTGGTGCAAAATTTTGCATACAAATAAGAGCGA 2271436 37 100.0 35 ..................................... CGCTCGTTTTCCGGTTCTTTCAGTGTGGACGAACA 2271508 37 100.0 38 ..................................... CGATTTGTAACCGATGAATCAGGCTTGAAATTCAAAGA 2271583 37 100.0 36 ..................................... CCATATCTGCCGATGGATCGATTTCCGATTTTAGTA 2271656 37 100.0 36 ..................................... AGAAACGTAAACGGTGATTGTTGTTTCAAAACAATA 2271729 37 100.0 36 ..................................... CCTCAAAGCCGATGAAAGTGGCAACGCCTTTATCGA 2271802 37 100.0 35 ..................................... GGATTTGGCGGTTCCGAGAACTTGCCCGTGAGCCT 2271874 37 100.0 36 ..................................... CGAGGATTTCGAGCTTATCGGTTTCCTGCATAAAGC 2271947 37 100.0 38 ..................................... TCGCCAAACATAGTAGGCAAATCCTCCGACCACTGCAA 2272022 37 100.0 35 ..................................... TCAAAATCGCTTCAGTCATCGATCGAATGTTAAGC 2272094 37 100.0 36 ..................................... TGAAAATACATTCCCGGAGTCATCGATTCTCCGGAT 2272167 37 100.0 36 ..................................... CATCGTGATTGTAAGGACAGGTGATTCTATTGTCCC 2272240 37 100.0 38 ..................................... CGCAGCGATCGTTCCGATATTTTTCCCGATATCATCTG 2272315 37 100.0 35 ..................................... ATACCAATAATATAAGGCAAGTAGTTTTAATAGTC 2272387 37 100.0 38 ..................................... CGATAAATGATATGTCTTGCTCAGTTGCGGCGTTCCAG 2272462 37 100.0 36 ..................................... CACAAACGGATCTATCACTTTTGTCGATCCTCCTAC 2272535 37 100.0 39 ..................................... CGTTGATCGCGATCGAGCGTTCGATTTGTCTGCATAAAA 2272611 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 32 37 100.0 36 GTTTCAGTCCCGTTGCCGGGATTAGTTTGTGCGAAAG # Left flank : CTATGATGCGATCGCGCTTTGCATGGTCTATCTTAACAAGTCGGGGATTTTGATCAAATGACTCGACGTAAATCCAATCTTGAGCTACGATAAAAGACGCATTGCACAAATGCTTTGCGGGATGTAGCGCAGCTTGGTAGCGCACCTCGTTCGGGACGAGGGGGTCGTAGGTTCAAATCCTATCATCCCGATTTCTAGCGGAGACGTAAACGCAAGCGGGGGCTAGCTTTCTAGCGTTTATCTCAAAGTTCTAATGAGTTAGAGAAAGTACTAGGGCTAACCGCTTTTTCTAGAGAGTTCCTACAAAAACTGACATGGCAGTGAGAAACCCTAGAAGCTTGAAAAAACAGACGATCGCAAACTGATTCAAAACTCATAATCCATTGGGTTGTGTATGTACTTAAGAAGGGTAGGGTTCATCTCTGCCCTTTTTCATGCCCTTCAGACCGCTTCTCATGCTCAGAACGTAGATTCAATTCCTGAAACTGTTTATCCGCCTT # Right flank : GCCCGCGCCTTAGAACCCTTACTGAACAAGAATTCTACAGCCACTTTTGGCAAAGGTCATCTGAAACCCTGATCCCAGCCTTTATTCTACGGCTGCGGCGCTTTTCTCGATCGCTAAAAATATTGAATTGTCTTGGTTCTGGCGATTTGGCAAACCTCCCAGGGATTTCGCCCTCGCTTCGGTTTGCCAAAAACTTGTCTCATTATAGAACGATCGCTGAAAATTAACCCACGATCGCGCTTTCTAAAGCAATATCCCGAATCTGCCGAACTCGCTCTTGGTATTCCGTCTCACTTAGCACTGAAGTTGCATTCTCGATCGACAATTCATCGATTTCAATCCACGATCGACATCCGCCGTAAGCATCCAGATACGGAATCGTGTGAGTCTGCGGTAAGCGAAACACTTTTAATAACAGCAAATATAAGGAAGAGCGAGGTTTCCACTTTAAGCGCTCCTCGACAAAGCGATCGTTCCAGATGTGAAACGGTAAGAGCGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTTGCCGGGATTAGTTTGTGCGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 5318712-5316036 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBWW01000001.1 Leptolyngbya sp. NIES-2104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 5318711 36 83.3 39 .AAA............G.......A.....C..... TTTGCTGTATTCAATCGACAAACGACAAACGATGGGCAG 5318636 36 91.7 36 ......................TT.........G.. ATGCGTGAGACTCATACTCCAAGTTTCATCTACTGG 5318564 36 91.7 38 ......................TCA........... GAACATTCCCAAGTCGATCGACCTGTCTGCGATACTCG 5318490 36 94.4 39 .....................G......A....... AAAGACACAGACCCAAACTATTTCAACAAAATTCACTTG 5318415 36 100.0 38 .................................... TAAAACTGATCCGACTGCAAACCAAAGACCGATGGTAG 5318341 36 100.0 37 .................................... TCAACGCCAAGGAAATCATTTGACGAATATCCAACGG 5318268 36 100.0 37 .................................... CAAACAAGTCGAAACCTCGATCTTAATTATCAGTCAG 5318195 36 100.0 44 .................................... AACAATCACTTGAACAAATTAGAGGGCGCTACCCTAATGCGGAG 5318115 36 100.0 41 .................................... TCATGCCCGTTGGTGACAGCACTACCCGAACTACGAGACAG 5318038 36 100.0 37 .................................... TCTGAATTGTCATGCGTTGGCATACTGCAAAAATGAG 5317965 36 97.2 36 ................C................... CCCCCGTGTCGTTGTCGAGTTTCTTGAGCGGTTCAG 5317893 36 100.0 40 .................................... GTTTGATGTATCTCCAGAGTTAAGCCCCATTATTGGTGGG 5317817 36 100.0 37 .................................... TTCTACCGACAATTCCACTATTTCCTACACCTACACG 5317744 36 100.0 37 .................................... GATTAGGAAGGAGTCCAATCATTAAAAGTGTAGATCG 5317671 36 100.0 38 .................................... TAGGCGGAATTTCATTCTGTTCAAAAACATTGCAGGCA 5317597 36 100.0 39 .................................... TGCTCAAGACCTGGAAGACCGTGCTTTAGCTGCAAGGAA 5317522 36 100.0 39 .................................... CGATTCCGCCTAATCGATCGATCGATTGGAATGAAACAA 5317447 36 100.0 35 .................................... CTTTTTACCAGTTACAGCAGCAGGCGCGATCGTAA 5317376 36 100.0 35 .................................... CTGTTGATGCGTCGGGGTGAAGATCCGATTCATCA 5317305 36 100.0 38 .................................... TTGTGTGACCCAAAATCACAACCCGATTTACAAGGCGA 5317231 36 100.0 36 .................................... GAATCGCTCATGCACGGAAAGATTGTCGCCAAAGCA 5317159 36 100.0 36 .................................... CCTCTTGTACGAAATCTCCCAAGCATTGCAACTGCA 5317087 36 100.0 36 .................................... AGAAGTGCTCTACTTTAATCAGTCGTAAAGCGTTCA 5317015 36 100.0 37 .................................... GACGTTAGACGATCGCATTACTGAAAATATGGAAAAA 5316942 36 100.0 36 .................................... CCAGAATTATGAATTCCGTTGTGATGAGTGCGAACA 5316870 36 100.0 37 .................................... TGATGCCCTTAACAAAGAAAATCGCGAATCTAGCGGA 5316797 36 100.0 38 .................................... AAACGCACGGCTGAAGAACAAGAAGCGATTCGGCGGAA 5316723 36 100.0 38 .................................... TTTTCCGAATGATTGGAAAGGTTTCGTACGTTATTACA 5316649 36 100.0 38 .................................... AAAAATGCGGCTATGTCTCCTAGAAAGAATCCGCACGA 5316575 36 100.0 36 .................................... TTAAGTATGAGCTACTCGCTTGTGAGGAGCGAGAAA 5316503 36 100.0 35 .................................... CTACTAATATGATGCTTCCTAAACCACGGCTAAAA 5316432 36 100.0 38 .................................... GTATTGTTTTGAAACAACAATCATTGTTTACGTTTTTA 5316358 36 100.0 39 .................................... AATACGAATCGGCAGATGTTTCGGTTTCGGGCATGGGGA 5316283 36 100.0 34 .................................... ATAGGTGGGTTCGATACCTGCTTTGATCGTTTGA 5316213 36 100.0 35 .................................... TTAGAAACAGTGAATCTGTAACTTTCATTGGTTGG 5316142 36 100.0 35 .................................... CAAACGATCGAACGAGTTTTCAACGCTCTTATGTG 5316071 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 37 36 98.9 37 TTTCCAACTAATCCGATCGCAAAGGATCGGTGCAAG # Left flank : ATAAGCCAAGCATAGCGTTGACTCGTCTGATGTGCCCAAATTTATTTGCGTTTGCCAAATGGCGACAATTCCAAGTTAATAGAAAGTCGCACTTGTGATAGGAAGCCAGAGCAAGATGTAGGGCATCGCCAACCGGATCGTTGGGCATCAGTTGTTGCCGAATATATGTTTCAACGATTTCCACGATCGCGGTTTCAATTGGAACAATGGTTAAATTGCTGAGAAGATCGATCGCTTCAGTTTTTCCCGGAAAGTCGCCGCGGTTGAGTTCATCCAATACTGCAAGACTGGTGACGAGGAAATAATTATCACTGACGGTGTTCCACCAGTCCCGCGTCCAATCGCGCCGCGCCATCATATCAGGCTGAATTCTGACCTCATAGTAGAAGCTGGGAATTGACGTTTCGATGTAGACTTTCGGCTTCATTTGATCAAGCGGCTTGAAAATAAATGCGATCGCATTCGTGAAAACGCGATCGCAGCAAATTGATTATTGCAAT # Right flank : CCCAGCTTCTAGAAGCCAGTCTCTATCTGGATTCTACACCCGATTTTGGCAAACCTCTCTTTGAAAATCAATAAACCTCTTCTTATTGAAAACAATTTAATGCAAAATCGCTGAAACTCTCACCGTTACTGAATCGCGAACCTCCACGAAAGAATAAGGGTTTCAGCCGATCGCCGACCTTTGCCAAAAATATCACTCGTCTCCCCAAAGTCGTCGAAATCCAAACGGTTCACCCTGCAAAAACCGCAAAAACTGCTCACACTCCTGCGACTCATCCGGAAAAATCGTCAACCACTCCAAAAACTCACCCGTTACCCTCGGTTCCGGCTTCCCCTCCGGATCTTGCTTCTTCTTCACCAGCTTCACCCGTGGATACATCCGATGCCACAATCGCCCAATCTGTCCCACCTTCCCAGTCAACCCACTCGATCGATAAATCGATCCTTCCGCCTGCACACGAGCAATTCGCTCCTGATACGCTCCATGAAACCAGCGAATCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCAACTAATCCGATCGCAAAGGATCGGTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //