Array 1 2864995-2865450 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902575.1 Acetobacter aceti ATCC 23746 A39UDRAFT_scaffold1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2864995 29 89.7 32 ...........G..G.............C GTAGTCAGATGGCCCCGGATGATTTTCAAGAC 2865056 29 93.1 32 ...........G..G.............. GTCAGCCGGGATGGGCTGGCCGCCTGCCGTTA 2865117 29 93.1 32 ...........G..G.............. CGGTATTGATGGACACACCTTCACCCGTTACA 2865178 29 100.0 32 ............................. GTCACGACTGAATCCCGGCCAATGGACGTGGT 2865239 29 100.0 32 ............................. GAGGCACGACCGTCTTTTGTCAGTTTCAGCGA 2865300 29 100.0 32 ............................. TCGAAGCGATAAAAAATCCGGATGGTGCGCCA 2865361 29 100.0 32 ............................. GGATATTTCCCGTCAGGATCAGTGACGAGCGC 2865422 29 72.4 0 ...........T.G.........ATGGTC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 GTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : GACAGGCGCTACGGTCGCTGCTCTGACCATCTATGACATGTGCAAGGCGTTAAGCCATGACATGGTGATTCACAGCGTCGGGCTGCTGGGCAAGGTCGGTGGAAAGCGGGATTTTGGCACTTTGCTGGCGCCGGCTGACGGCCAGAAGACCGCAGGACAACAGTAAAACAGGATTGGACCCGCTCCCTGAGATGCAGAACTGATTGTGATGTCAGCGAAATTCTGAAAACGGTTTTCGGCTACATCCAACGTCCTGCCGATTTCATATGAAAGTTCCGGCGTTGTCACCCGGAAGCCGTGCTGTCGCTGAGATGACTGTAGGTAGGGCGGGGGAGTGCCTGGTCTTCTGATGGAGGATGAAATTCACCAGATGATGATTGCTTTGTGCAGTCCTGAATCCGTATAAATTGTCTCTGAAAAACCGGTCTGAAACGCTGTTTTAAATCGGTAGGATCTTTGACATCAAAAAAGTTGTTTTAAATCAGTGGTTTCCACGAAGA # Right flank : CCATTTACGTTAAGGGCGGAAATGTCGCTCCACTGCATTGCTACGTGCGTGAGGAGCAGCATAAAACAGGGTTCAACGCGGGAAAAATCCGAACACGTCAGAATGACTTCTGTTTCGTTGCTGCAATACTATCGATGTAGGATAAAAATGGTGCCCAAGACCGGGATCGAACCAGTGACACTGCGATTTTCAGTCGCATGCTCTACCAACTGAGCTACTTGGGCACCTGGCCAGCGGTTTGACCGGCTGGTGTGGGGGAGCATTTAACCCGCCTTGCCATGAAGATCAAGCCGGGAGGTCGTCTTCTGTGTCAGAAATTTTTCCATCCTCGGAAACGGGTTCTGCCGGAACGCGATAATCCTCGGAAAACCACCGGCCGAGATCAATGTCAGCGCAGCGACGGGAACAGAATGGACGAAACTCCGGCGTCGAAGGTTTCTTGCAGATCGGGCAGGGGCGGGACTCAGCCACGGACAATACTCCATGAAAGAGAGGGAAGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTAGGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3596051-3593572 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902575.1 Acetobacter aceti ATCC 23746 A39UDRAFT_scaffold1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3596050 36 100.0 30 .................................... TGTCCGCCAGATCACGCCCGACCTCACACG 3595984 36 100.0 30 .................................... GGCCGTCGCCGGGCGTGTATGGCGTCACGC 3595918 36 100.0 30 .................................... ATGCATGTGATGCTGCTGGTTTGAATTATA 3595852 36 100.0 30 .................................... GAATCTGGCCTGCGCCGGATGGCATGCCGG 3595786 36 100.0 30 .................................... GCGTCCTATGTGGCGCCAGCTCATGCCCAG 3595720 36 100.0 30 .................................... ACTCCTCGCCCAGCATAGAACCTTCATCAA 3595654 36 100.0 30 .................................... GCGGCGGTCACGTCATCCGACACATCTCCC 3595588 36 100.0 30 .................................... GTAACGCTGGCGCGTCACCTCGGCCAGATA 3595522 36 100.0 30 .................................... AACGAATAGATGGACGGTGCGAGACCTTCG 3595456 36 100.0 30 .................................... TCGTTCCTTTCGCAGTATTCACTCCCGTCA 3595390 36 100.0 30 .................................... CCAGCCCGACGCATGCCGGGACGGCGGCAG 3595324 36 100.0 30 .................................... GCGGACGGTGTGATCGGTCCTGTGACGCTG 3595258 36 100.0 30 .................................... AAGAGCTTTCCTGAGGATGCTTTCCTGAAA 3595192 36 100.0 30 .................................... GCGCCAGCCGGAATCGGAGCTGCTCCATGC 3595126 36 100.0 30 .................................... GTAATCTTCCGCTGTAATTACAACAGAAGC 3595060 36 100.0 30 .................................... GAGTGTCAGGTAGTATCGCCTACCGCTATC 3594994 36 100.0 30 .................................... CAAGGGTATAGCTGATGCATTGGGTGCTTT 3594928 36 100.0 30 .................................... TCCGTCAGTTCACGGGTGCGAGCGTTGACT 3594862 36 100.0 30 .................................... ACGGTGTCAGCAGCCAGAACGCTCTGACGC 3594796 36 100.0 30 .................................... AAGATCTGACAGGCTGCCGCTCATGGCCGG 3594730 36 100.0 30 .................................... GCAGGCGACCCGATGCCGCCTGCGTCATGC 3594664 36 100.0 30 .................................... CCGAGATCGAGCATATGCGGGGGGTGTGGG 3594598 36 100.0 30 .................................... CGTCATCGCCAAGACCAGACAGTTTAATGC 3594532 36 100.0 30 .................................... GCAGCCTCCGCAGAGGGGATGAAATCTATT 3594466 36 100.0 30 .................................... GCCCACACCACTGCCCACCGGCTCCACGCT 3594400 36 100.0 30 .................................... CGTGCGTCTCATCCGTCCTCAATGTCGATC 3594334 36 100.0 30 .................................... CTCTGCTGATGGTGCCGCCTTCTTGGTTTA 3594268 36 100.0 30 .................................... CCACGCAAATCTTCACCATTCCACTGAAAG 3594202 36 100.0 30 .................................... TCACCCGCTGCTGAAACGTAGTAACGTGTG 3594136 36 100.0 30 .................................... AGAACCGGCATTGTCCAGCGCTTGTCCGCA 3594070 36 100.0 31 .................................... TTTTTCTCGTGTCGAAGGGCCGCATAAAGGA 3594003 36 100.0 30 .................................... GAAAAAAGATTTTTTCTGGTCGCCAGTCTT 3593937 36 100.0 30 .................................... GAACCAGAGGACGTGGCGGCCAGATAACTG 3593871 36 100.0 30 .................................... ATACGACGTGATGCCCCGCACGGTTTTGAA 3593805 36 100.0 30 .................................... AACGCCTACATCAAACAGACAGTAGCGGAG 3593739 36 100.0 30 .................................... AACTCCTCCATGGTGGAGTGCGGTGAGCCT 3593673 36 100.0 30 .................................... CTGCGGCGTTCGCGGCGGATCACGCCCATT 3593607 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Left flank : GTGCAGTCGCCACGGGCAGAGGCCCATTCGATAAGGCGATGCGCATTCATTGTATTCGGAACATGCTGAATGCGATCGAAGTAGATGGCACACTCAAATTCCTGCGCTTGCACTTCGACCAGTTGCAGCAATCGATCCGCTCGTTCCCTGCTGCCATGCCGGGATTCAAGGTAGGCGTTAAACGCCATTCCTTCGTTCTGTGAGGCCGGATTGAGCAGAAAAGGACGCCATGTGTAGTGTGTTTCGATATCAAGACGCTGTTTGAAGACACTGATCAACCGGCGAATGCCCATGCAGCACCACGGACAGACGAAATCGAAAACGATTTCGACGCTCATCCTTGGTCGTGAAGGGGCGAGCATGTTCATGACCGTATACTAGGGACATGATCATGGACATGCACCTTGTTTCGTAGGGTTGGTTACATTTTTGTGTAAAAATGAAGTATAAAATAGATTGAAAAAGCAAGAGTGTTTTTTTGTCTAATTGTTAAGGGAGAA # Right flank : ACCTTCTTGGTAACCGGTTGGTGCTGCATGATTTTTTGTCAGTCTTGTGGTCTGAAATCATAGCAGCACCAACTGTTTTGTGCCGGTCTGTTCTGTTTTTTGTGCGAGTCCGAGCATGATCTCCATTCGTCCATATTGTTTGTCGGTGACCTGAAGCGCTCGAATGCTCCCCTCTTTGGGCAAAGCGGCGCGAACGCGACGAAGATGTTTATCGATACTATCCTGTCCACGTCCTACACGGGCATAGACCGAGTATTGCAGCATCATAAAACCATCATCGCGGAGAAAATTACGAAAGCGGGTAGCCTGCCGTCGCTGGGGTTTTGTTTTCACTGGCAGATCAAAAAAAATCATCAGCCACAAGAATCTGGCCTCCTCTGCTTTCATGCTGTCCTCGCGTCTGATGTTATTCCGATACCGATATTATGTTCGTGGCTTCAGAGAGGGCTGGTGGTCGTAACAGGGCTGCGCTGCTGTGTGTCAGGGACTTCACGGTGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //