Array 1 52183-53112 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYU01000308.1 Pseudomonas aeruginosa strain HUM-343 NODE_27_length_53117_cov_8.72732_ID_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52183 28 100.0 33 ............................ CGAGATCGATGATGATGGGGAGGCTGTCTCCTA 52244 28 100.0 32 ............................ TTTGTCGGTGGCGGCATTGGCGCCCAGCGGGG 52304 28 100.0 32 ............................ GGAATCAACGGCGGCTTCGTGGTCCTAGGCGT 52364 28 100.0 32 ............................ ATCGTGACAAATTCGCCTCTGGCGAAAGTCAT 52424 28 100.0 32 ............................ ACATCAAACCAGTCAAGAGTCATCCGGAGCTG 52484 28 100.0 33 ............................ GATGGCCAGTCGAACAACCTTCGATCCACTCAT 52545 28 100.0 32 ............................ CCGCAAAAGGGGTGCATCCAATGGCCGTTGAA 52605 28 100.0 32 ............................ TTGTGCGCCCGTGGGCCCAGGACAACCAACAC 52665 28 100.0 32 ............................ TGGTCATTACCGACCTCAAAATGGGGAAGGGC 52725 28 100.0 32 ............................ GCGCTACCGGCTGCGGTACTGCTACTGCAACG 52785 28 100.0 32 ............................ ACAAAGAGCACGGCGAAGTCGCACGGCACACG 52845 28 100.0 32 ............................ GTACATGAGAGGCCGCAAGGCTATCCCAGGCC 52905 28 100.0 32 ............................ TGTCGGCCACTGAACAGGATCGTGATGTGATG 52965 28 100.0 32 ............................ TCAGAGACGGCCAGCTCAAGCCAAGCGCACGC 53025 28 100.0 32 ............................ GTCGCGACAAGACCGAACCCGAAAGAGAACGC 53085 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGTCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ATGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 273-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYU01000063.1 Pseudomonas aeruginosa strain HUM-343 NODE_606_length_272_cov_2.09677_ID_1211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 272 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 212 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 152 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 92 28 100.0 32 ............................ ATCACCGCCTTGACGCCGACGAAGGCAACAGC 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : AGTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYU01000010.1 Pseudomonas aeruginosa strain HUM-343 NODE_683_length_215_cov_2.4875_ID_1365, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32 28 96.4 32 ............A............... GTCATACCGTTGAGGCGCGCCAGTTCGTCGAG 92 28 100.0 32 ............................ AGAGCGCTGGGGGCAACTCGCGGTGGATCATC 152 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TACCTTTAAAAGTCTTTAAAAGGCCTTTTAGG # Right flank : AGTCCGTACTTGATCTCGGCCCAGGCGGTATCGTTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16893-18302 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYU01000285.1 Pseudomonas aeruginosa strain HUM-343 NODE_99_length_22906_cov_8.85423_ID_201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16893 28 100.0 32 ............................ TAATAGGAGTACGGACACATGTTCCTCACCCA 16953 28 100.0 32 ............................ GCAGCGCAATGCCCCACCTGCAGAAACGAAAA 17013 28 100.0 32 ............................ AGCATCGCGCCAAGGGCGGCTTCGATCAGTTG 17073 28 100.0 32 ............................ TGATCGCGGTCCAGTTCGTTCGCGACGGCGAA 17133 28 100.0 32 ............................ TTCGATATCAGCGACAAGGGTCGCGCCCCAGT 17193 28 100.0 32 ............................ TCGGCGCAATGCCCGGCATGCTCAACCTGGCC 17253 28 100.0 32 ............................ ATCAGCCTCTGGCCGGAGGATCAGCAGGCGGA 17313 28 100.0 32 ............................ GAAGAGCAGAGGCAGGAATGCCTAGCTCTAAA 17373 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 17433 28 100.0 32 ............................ TGGTGGCTGGCGATGTGATCCGATTGGCCAAT 17493 28 100.0 32 ............................ AACAAGGTTTCTTCTGGCCAGGGGCTGTACCC 17553 28 100.0 32 ............................ GAATGACGCAACCGAAGCGGCAGCAGCGGCTG 17613 28 100.0 32 ............................ TTCGAACTCCTGCGCATGGAAGGCCTGCGCAC 17673 28 100.0 32 ............................ TGAGTGCTCACGGGAGGCTGAGGCCGAAAAGC 17733 28 100.0 32 ............................ TACAGCGTGATATCCAGATCATCAACGACACG 17793 28 96.4 32 ....T....................... TATGACCGGAGGCTGTCTTTGTCCGAGGTGGT 17853 28 100.0 32 ............................ ATGACCGGAGGCTGTCTTTGTCCGAGGTGGTT 17913 28 100.0 32 ............................ ATTACCGTTGCCATCGCCGCCACCGTCGCCGC 17973 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 18033 28 100.0 33 ............................ GTCCTTGAACAGCTTCGCGGCGCGGGCGGTGTA 18094 28 96.4 32 ............G............... ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 18154 28 92.9 33 ....C.......G............... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 18215 28 96.4 32 ............G............... TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 18275 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //